miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10902 5' -52.5 NC_002794.1 + 103670 0.68 0.953771
Target:  5'- cGGugCGaGUgGAAGUgGAAGGGCaGCg -3'
miRNA:   3'- aUCugGC-CAgCUUCAgUUUUCCG-CGa -5'
10902 5' -52.5 NC_002794.1 + 104890 0.68 0.949635
Target:  5'- cGGGCCGGccgCGAGGcgccgugcugcUCGAGcAGGCGCc -3'
miRNA:   3'- aUCUGGCCa--GCUUC-----------AGUUU-UCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 106331 0.66 0.989611
Target:  5'- -cGACgGGUCGAcgguucgccgGGUCGAcggcgggcGGGCGCc -3'
miRNA:   3'- auCUGgCCAGCU----------UCAGUUu-------UCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 107042 0.68 0.953771
Target:  5'- gGGACCcccgcGUCGGAGgCGGcGGGCGCg -3'
miRNA:   3'- aUCUGGc----CAGCUUCaGUUuUCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 111397 0.68 0.968007
Target:  5'- -cGGCCaGcgcUCGggGUCGAGaccguAGGCGCg -3'
miRNA:   3'- auCUGGcC---AGCuuCAGUUU-----UCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 113376 0.66 0.989611
Target:  5'- gGGugCGGgcCGccGUCGugcAGGCGCUg -3'
miRNA:   3'- aUCugGCCa-GCuuCAGUuu-UCCGCGA- -5'
10902 5' -52.5 NC_002794.1 + 115503 0.66 0.982676
Target:  5'- gUAGACCaGGUUGAGGUCcgccugucgcAGGaCGCg -3'
miRNA:   3'- -AUCUGG-CCAGCUUCAGuuu-------UCC-GCGa -5'
10902 5' -52.5 NC_002794.1 + 116372 0.76 0.612571
Target:  5'- -cGACCGGUCGGuggcgugcgGGUCGAAgacgaagguguggcgGGGCGCg -3'
miRNA:   3'- auCUGGCCAGCU---------UCAGUUU---------------UCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 116867 0.66 0.989611
Target:  5'- -cGGCCGuGUCGcgcucGUCAgGGGGGCGCc -3'
miRNA:   3'- auCUGGC-CAGCuu---CAGU-UUUCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 120876 0.69 0.925315
Target:  5'- -cGGCUGGUguccgaacggCGAGGUCAccgcGGGGGUGCUg -3'
miRNA:   3'- auCUGGCCA----------GCUUCAGU----UUUCCGCGA- -5'
10902 5' -52.5 NC_002794.1 + 124112 0.67 0.971015
Target:  5'- aGGGCCgGGUCGAc-UCGAGAGcGCGUc -3'
miRNA:   3'- aUCUGG-CCAGCUucAGUUUUC-CGCGa -5'
10902 5' -52.5 NC_002794.1 + 126424 0.69 0.945259
Target:  5'- cUGGcuGCUGGUCGAGGUgu--GGGCGCc -3'
miRNA:   3'- -AUC--UGGCCAGCUUCAguuuUCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 133641 0.66 0.98307
Target:  5'- gGGAagaaGGUCGggGUCGgacccgaggGAGGGuCGCg -3'
miRNA:   3'- aUCUgg--CCAGCuuCAGU---------UUUCC-GCGa -5'
10902 5' -52.5 NC_002794.1 + 137532 0.7 0.907772
Target:  5'- -uGACCGaGaCGGAGUCuucGGGCGCg -3'
miRNA:   3'- auCUGGC-CaGCUUCAGuuuUCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 138376 0.67 0.976411
Target:  5'- --uACCGGUCGGcgauGGgcugcCAGAAGGCGUc -3'
miRNA:   3'- aucUGGCCAGCU----UCa----GUUUUCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 140177 0.66 0.988201
Target:  5'- uUGGAUCGGgucggcgacggCGucGUCGAGGGGCGa- -3'
miRNA:   3'- -AUCUGGCCa----------GCuuCAGUUUUCCGCga -5'
10902 5' -52.5 NC_002794.1 + 141964 0.66 0.988201
Target:  5'- -cGGCCGGgaugaUCG-AGUCGc-AGGCGCa -3'
miRNA:   3'- auCUGGCC-----AGCuUCAGUuuUCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 143021 0.66 0.989611
Target:  5'- -cGugCGGUCGGccgGGUCGAcgugcAGGGcCGCc -3'
miRNA:   3'- auCugGCCAGCU---UCAGUU-----UUCC-GCGa -5'
10902 5' -52.5 NC_002794.1 + 143285 0.71 0.858507
Target:  5'- -cGGCCGcUCGggGUCGGGcGGGUGCa -3'
miRNA:   3'- auCUGGCcAGCuuCAGUUU-UCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 143416 0.71 0.858507
Target:  5'- cGGGCCGGgCGAAGgucCGGAAGGCcaGCa -3'
miRNA:   3'- aUCUGGCCaGCUUCa--GUUUUCCG--CGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.