miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10902 5' -52.5 NC_002794.1 + 191869 0.66 0.988201
Target:  5'- aAGGCCGGcggCGGAGggggCGgcGGAGGCGg- -3'
miRNA:   3'- aUCUGGCCa--GCUUCa---GU--UUUCCGCga -5'
10902 5' -52.5 NC_002794.1 + 185180 0.67 0.978814
Target:  5'- -cGGCgCGGUCGgcG-CGGucGGCGCg -3'
miRNA:   3'- auCUG-GCCAGCuuCaGUUuuCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 183177 0.66 0.984939
Target:  5'- --aGCCGGUCGggGacCGAGAcGCGCc -3'
miRNA:   3'- aucUGGCCAGCuuCa-GUUUUcCGCGa -5'
10902 5' -52.5 NC_002794.1 + 179105 0.66 0.988201
Target:  5'- -cGuCCGGUCGuccgcGGUCc--GGGCGCg -3'
miRNA:   3'- auCuGGCCAGCu----UCAGuuuUCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 176481 0.68 0.953771
Target:  5'- cAGACCGuGUCGGuuGGUucucucacgagCAcGAGGCGCa -3'
miRNA:   3'- aUCUGGC-CAGCU--UCA-----------GUuUUCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 161078 0.66 0.984939
Target:  5'- cGGuCCGGUUGAuGUUcgu-GGCGCUa -3'
miRNA:   3'- aUCuGGCCAGCUuCAGuuuuCCGCGA- -5'
10902 5' -52.5 NC_002794.1 + 156440 0.73 0.765219
Target:  5'- gAGACCGGUCGcgccgaaggcgguuGGUUAGGGGGCGg- -3'
miRNA:   3'- aUCUGGCCAGCu-------------UCAGUUUUCCGCga -5'
10902 5' -52.5 NC_002794.1 + 155905 0.71 0.873722
Target:  5'- aUAGACCGGcUCGAcGUgCGGAgccGGGUGCUu -3'
miRNA:   3'- -AUCUGGCC-AGCUuCA-GUUU---UCCGCGA- -5'
10902 5' -52.5 NC_002794.1 + 154804 0.71 0.872982
Target:  5'- -uGACCGGgaucagaUCGggGUCGuucAAGGCGUc -3'
miRNA:   3'- auCUGGCC-------AGCuuCAGUu--UUCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 154678 0.72 0.850579
Target:  5'- aAGACCGGuuUCGGucGUCGAucuGGGCGUg -3'
miRNA:   3'- aUCUGGCC--AGCUu-CAGUUu--UCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 149463 0.66 0.98307
Target:  5'- gGGGgCGGUCGAGGagCGAGgGGGgGCg -3'
miRNA:   3'- aUCUgGCCAGCUUCa-GUUU-UCCgCGa -5'
10902 5' -52.5 NC_002794.1 + 149342 0.71 0.888044
Target:  5'- --aACCGGcCGggGUCGcGGGGGCGUg -3'
miRNA:   3'- aucUGGCCaGCuuCAGU-UUUCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 148225 0.67 0.976411
Target:  5'- cGGucuCCGGUCGgcGUCAccacGCGCUg -3'
miRNA:   3'- aUCu--GGCCAGCuuCAGUuuucCGCGA- -5'
10902 5' -52.5 NC_002794.1 + 148113 0.66 0.986646
Target:  5'- aAGAagcgaCGGUCGguGUC---GGGCGCg -3'
miRNA:   3'- aUCUg----GCCAGCuuCAGuuuUCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 147214 0.68 0.964785
Target:  5'- cGGGCCGGggcCGggG-CGuu-GGCGCg -3'
miRNA:   3'- aUCUGGCCa--GCuuCaGUuuuCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 146879 0.66 0.982676
Target:  5'- gGGGCgCGGUCGGccgaugauuaUAAAAGGCGCUc -3'
miRNA:   3'- aUCUG-GCCAGCUuca-------GUUUUCCGCGA- -5'
10902 5' -52.5 NC_002794.1 + 145594 0.7 0.901435
Target:  5'- -cGGCCGGcucccgCGGAGUC---GGGCGCg -3'
miRNA:   3'- auCUGGCCa-----GCUUCAGuuuUCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 143416 0.71 0.858507
Target:  5'- cGGGCCGGgCGAAGgucCGGAAGGCcaGCa -3'
miRNA:   3'- aUCUGGCCaGCUUCa--GUUUUCCG--CGa -5'
10902 5' -52.5 NC_002794.1 + 143285 0.71 0.858507
Target:  5'- -cGGCCGcUCGggGUCGGGcGGGUGCa -3'
miRNA:   3'- auCUGGCcAGCuuCAGUUU-UCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 143021 0.66 0.989611
Target:  5'- -cGugCGGUCGGccgGGUCGAcgugcAGGGcCGCc -3'
miRNA:   3'- auCugGCCAGCU---UCAGUU-----UUCC-GCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.