miRNA display CGI


Results 41 - 57 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10902 5' -52.5 NC_002794.1 + 106331 0.66 0.989611
Target:  5'- -cGACgGGUCGAcgguucgccgGGUCGAcggcgggcGGGCGCc -3'
miRNA:   3'- auCUGgCCAGCU----------UCAGUUu-------UCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 116867 0.66 0.989611
Target:  5'- -cGGCCGuGUCGcgcucGUCAgGGGGGCGCc -3'
miRNA:   3'- auCUGGC-CAGCuu---CAGU-UUUCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 161078 0.66 0.984939
Target:  5'- cGGuCCGGUUGAuGUUcgu-GGCGCUa -3'
miRNA:   3'- aUCuGGCCAGCUuCAGuuuuCCGCGA- -5'
10902 5' -52.5 NC_002794.1 + 149463 0.66 0.98307
Target:  5'- gGGGgCGGUCGAGGagCGAGgGGGgGCg -3'
miRNA:   3'- aUCUgGCCAGCUUCa-GUUU-UCCgCGa -5'
10902 5' -52.5 NC_002794.1 + 111397 0.68 0.968007
Target:  5'- -cGGCCaGcgcUCGggGUCGAGaccguAGGCGCg -3'
miRNA:   3'- auCUGGcC---AGCuuCAGUUU-----UCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 147214 0.68 0.964785
Target:  5'- cGGGCCGGggcCGggG-CGuu-GGCGCg -3'
miRNA:   3'- aUCUGGCCa--GCuuCaGUuuuCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 124112 0.67 0.971015
Target:  5'- aGGGCCgGGUCGAc-UCGAGAGcGCGUc -3'
miRNA:   3'- aUCUGG-CCAGCUucAGUUUUC-CGCGa -5'
10902 5' -52.5 NC_002794.1 + 138376 0.67 0.976411
Target:  5'- --uACCGGUCGGcgauGGgcugcCAGAAGGCGUc -3'
miRNA:   3'- aucUGGCCAGCU----UCa----GUUUUCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 51225 0.67 0.971015
Target:  5'- -cGGCCGGcCGAugggaaacGGUCGcuucuaGAAGGCGUg -3'
miRNA:   3'- auCUGGCCaGCU--------UCAGU------UUUCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 18079 0.67 0.976411
Target:  5'- -uGugCGuGUCGguGgcgCAGAAGGCGCc -3'
miRNA:   3'- auCugGC-CAGCuuCa--GUUUUCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 91273 0.67 0.981031
Target:  5'- gUGGACCGGcgCGGccuguacguGUCGGcgcugagcGAGGCGCUc -3'
miRNA:   3'- -AUCUGGCCa-GCUu--------CAGUU--------UUCCGCGA- -5'
10902 5' -52.5 NC_002794.1 + 146879 0.66 0.982676
Target:  5'- gGGGCgCGGUCGGccgaugauuaUAAAAGGCGCUc -3'
miRNA:   3'- aUCUG-GCCAGCUuca-------GUUUUCCGCGA- -5'
10902 5' -52.5 NC_002794.1 + 185180 0.67 0.978814
Target:  5'- -cGGCgCGGUCGgcG-CGGucGGCGCg -3'
miRNA:   3'- auCUG-GCCAGCuuCaGUUuuCCGCGa -5'
10902 5' -52.5 NC_002794.1 + 148225 0.67 0.976411
Target:  5'- cGGucuCCGGUCGgcGUCAccacGCGCUg -3'
miRNA:   3'- aUCu--GGCCAGCuuCAGUuuucCGCGA- -5'
10902 5' -52.5 NC_002794.1 + 115503 0.66 0.982676
Target:  5'- gUAGACCaGGUUGAGGUCcgccugucgcAGGaCGCg -3'
miRNA:   3'- -AUCUGG-CCAGCUUCAGuuu-------UCC-GCGa -5'
10902 5' -52.5 NC_002794.1 + 133641 0.66 0.98307
Target:  5'- gGGAagaaGGUCGggGUCGgacccgaggGAGGGuCGCg -3'
miRNA:   3'- aUCUgg--CCAGCuuCAGU---------UUUCC-GCGa -5'
10902 5' -52.5 NC_002794.1 + 113376 0.66 0.989611
Target:  5'- gGGugCGGgcCGccGUCGugcAGGCGCUg -3'
miRNA:   3'- aUCugGCCa-GCuuCAGUuu-UCCGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.