miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10903 3' -57 NC_002794.1 + 128377 0.66 0.924328
Target:  5'- gAGCUCGgacGUcucgCCGAUCcCG-GAUGGGCg -3'
miRNA:   3'- -UCGGGCa--CG----GGCUAGaGCuCUAUCCG- -5'
10903 3' -57 NC_002794.1 + 41264 0.66 0.924328
Target:  5'- cGGCCCGUcGUCgCGcUC-CGAGAacGGCg -3'
miRNA:   3'- -UCGGGCA-CGG-GCuAGaGCUCUauCCG- -5'
10903 3' -57 NC_002794.1 + 37943 0.66 0.924328
Target:  5'- cGCCCGUGCCuCGGcgaCUCGcuc--GGCg -3'
miRNA:   3'- uCGGGCACGG-GCUa--GAGCucuauCCG- -5'
10903 3' -57 NC_002794.1 + 188939 0.66 0.924328
Target:  5'- aGGCCCGcUGUCCGggCgugCGcAGGUucAGGUc -3'
miRNA:   3'- -UCGGGC-ACGGGCuaGa--GC-UCUA--UCCG- -5'
10903 3' -57 NC_002794.1 + 89930 0.66 0.91892
Target:  5'- aGGCgCGgGCgCCGGcuUCUCGGGAgccgacgucgAGGCg -3'
miRNA:   3'- -UCGgGCaCG-GGCU--AGAGCUCUa---------UCCG- -5'
10903 3' -57 NC_002794.1 + 143329 0.66 0.91892
Target:  5'- cGGUCgCGUGCUCGGgcagcgggCUCGGgcGAUAGGg -3'
miRNA:   3'- -UCGG-GCACGGGCUa-------GAGCU--CUAUCCg -5'
10903 3' -57 NC_002794.1 + 123182 0.66 0.91892
Target:  5'- gAGaaCGUGCCCGAcggccgcgUCUCgGAGAUGGa- -3'
miRNA:   3'- -UCggGCACGGGCU--------AGAG-CUCUAUCcg -5'
10903 3' -57 NC_002794.1 + 4852 0.66 0.913286
Target:  5'- cGGCCCacGUGCCCGA---CGAagcGUAGGUg -3'
miRNA:   3'- -UCGGG--CACGGGCUagaGCUc--UAUCCG- -5'
10903 3' -57 NC_002794.1 + 47383 0.66 0.913286
Target:  5'- gAGCCCGaGCCCGAgCcCGAGcccgaagccgccGUcGGCg -3'
miRNA:   3'- -UCGGGCaCGGGCUaGaGCUC------------UAuCCG- -5'
10903 3' -57 NC_002794.1 + 110159 0.66 0.913286
Target:  5'- gAGCaCGUcGUCgCGGggcaugaggCUCGAGAUGGGCc -3'
miRNA:   3'- -UCGgGCA-CGG-GCUa--------GAGCUCUAUCCG- -5'
10903 3' -57 NC_002794.1 + 115840 0.66 0.913286
Target:  5'- gGGCCCGgcgggcucggGCCUGGgacgCgCGAGGgguccgGGGCg -3'
miRNA:   3'- -UCGGGCa---------CGGGCUa---GaGCUCUa-----UCCG- -5'
10903 3' -57 NC_002794.1 + 189601 0.66 0.913286
Target:  5'- uAGCCCGUccGCCCGAgacccgccgaCUCGGccGAcuGGCu -3'
miRNA:   3'- -UCGGGCA--CGGGCUa---------GAGCU--CUauCCG- -5'
10903 3' -57 NC_002794.1 + 151026 0.66 0.907428
Target:  5'- cGCCCGUggucGCCCG-UCU-GAuGAcGGGCg -3'
miRNA:   3'- uCGGGCA----CGGGCuAGAgCU-CUaUCCG- -5'
10903 3' -57 NC_002794.1 + 126671 0.66 0.901346
Target:  5'- gGGCCgCGgcgaggGCCCGaAUCgggGAGGgagGGGCg -3'
miRNA:   3'- -UCGG-GCa-----CGGGC-UAGag-CUCUa--UCCG- -5'
10903 3' -57 NC_002794.1 + 66479 0.66 0.901346
Target:  5'- cGGCCaCGauaGCCCGGauUCUCGuaacuGAUcGGCg -3'
miRNA:   3'- -UCGG-GCa--CGGGCU--AGAGCu----CUAuCCG- -5'
10903 3' -57 NC_002794.1 + 115395 0.66 0.901346
Target:  5'- cGGCCCGUGCUgCGGaCUCcAGu--GGCg -3'
miRNA:   3'- -UCGGGCACGG-GCUaGAGcUCuauCCG- -5'
10903 3' -57 NC_002794.1 + 123675 0.67 0.895043
Target:  5'- cGCUCG-GCCCGggCU-GGGAgcAGGCg -3'
miRNA:   3'- uCGGGCaCGGGCuaGAgCUCUa-UCCG- -5'
10903 3' -57 NC_002794.1 + 186021 0.67 0.888523
Target:  5'- gGGCCCGgGCCCGGaCcCGGGccccGGCu -3'
miRNA:   3'- -UCGGGCaCGGGCUaGaGCUCuau-CCG- -5'
10903 3' -57 NC_002794.1 + 127670 0.67 0.888523
Target:  5'- aAGCCgGggaccucgaGCCCGGUCggggCGAcGUGGGUg -3'
miRNA:   3'- -UCGGgCa--------CGGGCUAGa---GCUcUAUCCG- -5'
10903 3' -57 NC_002794.1 + 58087 0.67 0.881787
Target:  5'- cGGCCCGgcGCCCGcgCUCGAccgcuGCg -3'
miRNA:   3'- -UCGGGCa-CGGGCuaGAGCUcuaucCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.