miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10903 3' -57 NC_002794.1 + 9539 1.11 0.002369
Target:  5'- uAGCCCGUGCCCGAUCUCGAGAUAGGCu -3'
miRNA:   3'- -UCGGGCACGGGCUAGAGCUCUAUCCG- -5'
10903 3' -57 NC_002794.1 + 9496 1.05 0.005784
Target:  5'- uAGUCCGUGCCCGGUCUCGAGAUAGGCu -3'
miRNA:   3'- -UCGGGCACGGGCUAGAGCUCUAUCCG- -5'
10903 3' -57 NC_002794.1 + 9634 0.88 0.083511
Target:  5'- uAGCCCGUGCCCGGUCUCGAaAUAGa- -3'
miRNA:   3'- -UCGGGCACGGGCUAGAGCUcUAUCcg -5'
10903 3' -57 NC_002794.1 + 9453 0.83 0.16994
Target:  5'- uAGCCCGUaUCCGGUCUCGAGAUAGa- -3'
miRNA:   3'- -UCGGGCAcGGGCUAGAGCUCUAUCcg -5'
10903 3' -57 NC_002794.1 + 20602 0.8 0.255665
Target:  5'- cGCuCCGUGCCCGGcUUCGAGAUGcccGGCu -3'
miRNA:   3'- uCG-GGCACGGGCUaGAGCUCUAU---CCG- -5'
10903 3' -57 NC_002794.1 + 143269 0.78 0.313967
Target:  5'- aGGCCCG-GCCCGGcgccggccgCUCGGGGUcGGGCg -3'
miRNA:   3'- -UCGGGCaCGGGCUa--------GAGCUCUA-UCCG- -5'
10903 3' -57 NC_002794.1 + 9582 0.77 0.372995
Target:  5'- uAGCCCGUacccgGuCCCGGUCUCGAGAUGauagacuGGUc -3'
miRNA:   3'- -UCGGGCA-----C-GGGCUAGAGCUCUAU-------CCG- -5'
10903 3' -57 NC_002794.1 + 104734 0.74 0.5143
Target:  5'- gGGCCCGguggagcGCUCGAUCUCGuGGUAG-Cg -3'
miRNA:   3'- -UCGGGCa------CGGGCUAGAGCuCUAUCcG- -5'
10903 3' -57 NC_002794.1 + 32171 0.73 0.561646
Target:  5'- uGGCCCGccugGcCCCGGUCccgcagaUCGAGAU-GGCg -3'
miRNA:   3'- -UCGGGCa---C-GGGCUAG-------AGCUCUAuCCG- -5'
10903 3' -57 NC_002794.1 + 145341 0.73 0.57245
Target:  5'- gGGCCCGagcggGCCCGAgCUgGGGGUguggucaccGGGCg -3'
miRNA:   3'- -UCGGGCa----CGGGCUaGAgCUCUA---------UCCG- -5'
10903 3' -57 NC_002794.1 + 104278 0.73 0.582316
Target:  5'- cGGCaCCGUGCCgaacagGAUCUCGGGccGGGUg -3'
miRNA:   3'- -UCG-GGCACGGg-----CUAGAGCUCuaUCCG- -5'
10903 3' -57 NC_002794.1 + 80464 0.72 0.63202
Target:  5'- cGGCCCGcUGCCCGucuUCcgcgUCGAGcu-GGCg -3'
miRNA:   3'- -UCGGGC-ACGGGCu--AG----AGCUCuauCCG- -5'
10903 3' -57 NC_002794.1 + 109517 0.71 0.701377
Target:  5'- cGCCCG-GCCCGcgCUCGuuc--GGCg -3'
miRNA:   3'- uCGGGCaCGGGCuaGAGCucuauCCG- -5'
10903 3' -57 NC_002794.1 + 104490 0.7 0.730435
Target:  5'- cGGCCaCGgcgGCCgGGUCgggCGAGAacGGGCu -3'
miRNA:   3'- -UCGG-GCa--CGGgCUAGa--GCUCUa-UCCG- -5'
10903 3' -57 NC_002794.1 + 146719 0.7 0.749418
Target:  5'- uGGCCC-UGCUgGAUCUCGAucucugacGAcGGGCc -3'
miRNA:   3'- -UCGGGcACGGgCUAGAGCU--------CUaUCCG- -5'
10903 3' -57 NC_002794.1 + 136542 0.69 0.802881
Target:  5'- gAGCCCGaGCaCCGGguacucgUCUCGcAGGUgcucGGGCg -3'
miRNA:   3'- -UCGGGCaCG-GGCU-------AGAGC-UCUA----UCCG- -5'
10903 3' -57 NC_002794.1 + 12805 0.69 0.803747
Target:  5'- cGGCCCGggGCCCGugCUCGAGGUc--- -3'
miRNA:   3'- -UCGGGCa-CGGGCuaGAGCUCUAuccg -5'
10903 3' -57 NC_002794.1 + 85042 0.69 0.803747
Target:  5'- uGCCuCGgGCCCGcgCUCGAcGAccGGCc -3'
miRNA:   3'- uCGG-GCaCGGGCuaGAGCU-CUauCCG- -5'
10903 3' -57 NC_002794.1 + 30070 0.68 0.820764
Target:  5'- gGGUCCGgucGCCCGGUCgaCGAGGcgcgcGGCc -3'
miRNA:   3'- -UCGGGCa--CGGGCUAGa-GCUCUau---CCG- -5'
10903 3' -57 NC_002794.1 + 116645 0.68 0.829032
Target:  5'- gGGCCCGgccGUCCGGcUCUUGAGGcgcugcucGGCg -3'
miRNA:   3'- -UCGGGCa--CGGGCU-AGAGCUCUau------CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.