miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10903 5' -59 NC_002794.1 + 48701 0.66 0.861237
Target:  5'- uCACgucGGCCCaGUACUCGGUgCgCGGa -3'
miRNA:   3'- uGUGaa-UCGGG-CAUGGGCCAgG-GCCa -5'
10903 5' -59 NC_002794.1 + 88568 0.66 0.861237
Target:  5'- gGCACUUuucGUCCGUACguaucgaucuuCCGGgUCCGGUu -3'
miRNA:   3'- -UGUGAAu--CGGGCAUG-----------GGCCaGGGCCA- -5'
10903 5' -59 NC_002794.1 + 153944 0.66 0.861237
Target:  5'- gACACUcgcUGGCUC-UACCCuGG-CCCGGc -3'
miRNA:   3'- -UGUGA---AUCGGGcAUGGG-CCaGGGCCa -5'
10903 5' -59 NC_002794.1 + 154390 0.66 0.853808
Target:  5'- gGCAC---GCCCGUucGCgUGGUgCCGGUg -3'
miRNA:   3'- -UGUGaauCGGGCA--UGgGCCAgGGCCA- -5'
10903 5' -59 NC_002794.1 + 183348 0.66 0.853808
Target:  5'- aGCACguacagcGCgCCGgACCCcaGGUCCCGGc -3'
miRNA:   3'- -UGUGaau----CG-GGCaUGGG--CCAGGGCCa -5'
10903 5' -59 NC_002794.1 + 114668 0.66 0.846192
Target:  5'- cGCGCgc-GCCgGUACUCGGaccgcagggCCCGGa -3'
miRNA:   3'- -UGUGaauCGGgCAUGGGCCa--------GGGCCa -5'
10903 5' -59 NC_002794.1 + 137143 0.66 0.846192
Target:  5'- cCGCcc-GCCCGgccgGCCgcccuCGGUCCCGGc -3'
miRNA:   3'- uGUGaauCGGGCa---UGG-----GCCAGGGCCa -5'
10903 5' -59 NC_002794.1 + 148769 0.66 0.838397
Target:  5'- cGCGCUggagugcGCCUgGUACCCGGUCCg--- -3'
miRNA:   3'- -UGUGAau-----CGGG-CAUGGGCCAGGgcca -5'
10903 5' -59 NC_002794.1 + 131424 0.66 0.830428
Target:  5'- gGCACcgGGCCCGUcaucacgaccucGCCCGuGUUaggcaCCGGg -3'
miRNA:   3'- -UGUGaaUCGGGCA------------UGGGC-CAG-----GGCCa -5'
10903 5' -59 NC_002794.1 + 488 0.67 0.810635
Target:  5'- gGCGUUUAGCCCGUcGCCUGGguggggcguugccUCCGGUu -3'
miRNA:   3'- -UGUGAAUCGGGCA-UGGGCCa------------GGGCCA- -5'
10903 5' -59 NC_002794.1 + 20600 0.67 0.796954
Target:  5'- uGCGCUccguGCCCGgcuucgagaUGCCCGGcUCCGGc -3'
miRNA:   3'- -UGUGAau--CGGGC---------AUGGGCCaGGGCCa -5'
10903 5' -59 NC_002794.1 + 100585 0.67 0.788223
Target:  5'- cACGCUcGGgCCGUGCgcgCCGaUCCCGGg -3'
miRNA:   3'- -UGUGAaUCgGGCAUG---GGCcAGGGCCa -5'
10903 5' -59 NC_002794.1 + 189592 0.67 0.779361
Target:  5'- gGCGCcccUUAGCCCGUccGCCCGaGaCCCGc- -3'
miRNA:   3'- -UGUG---AAUCGGGCA--UGGGC-CaGGGCca -5'
10903 5' -59 NC_002794.1 + 114751 0.67 0.779361
Target:  5'- gGCGCc--GCCCGccgGCgCCGGUCCuCGGc -3'
miRNA:   3'- -UGUGaauCGGGCa--UG-GGCCAGG-GCCa -5'
10903 5' -59 NC_002794.1 + 8155 0.67 0.776678
Target:  5'- cCGCUUcuccuucucccccgGGCCCGgcgucccGCCCGGUuucccaCCCGGg -3'
miRNA:   3'- uGUGAA--------------UCGGGCa------UGGGCCA------GGGCCa -5'
10903 5' -59 NC_002794.1 + 84178 0.68 0.752076
Target:  5'- aGCGCUcGGCCCGgcGCUCGG-CCCGc- -3'
miRNA:   3'- -UGUGAaUCGGGCa-UGGGCCaGGGCca -5'
10903 5' -59 NC_002794.1 + 191072 0.68 0.752076
Target:  5'- gACACUc-GCCCGccGCCCGGUCCa--- -3'
miRNA:   3'- -UGUGAauCGGGCa-UGGGCCAGGgcca -5'
10903 5' -59 NC_002794.1 + 30065 0.68 0.749295
Target:  5'- cCGCggGGUCCGgucGCCCGGUCgacgaggcgcgcggCCGGUc -3'
miRNA:   3'- uGUGaaUCGGGCa--UGGGCCAG--------------GGCCA- -5'
10903 5' -59 NC_002794.1 + 115836 0.68 0.742774
Target:  5'- -gGCggGGCCCGgcggGCUCGGgCCUGGg -3'
miRNA:   3'- ugUGaaUCGGGCa---UGGGCCaGGGCCa -5'
10903 5' -59 NC_002794.1 + 181819 0.68 0.733383
Target:  5'- cGCACgucggGGUUCGcgGCCaGGUCCCGGg -3'
miRNA:   3'- -UGUGaa---UCGGGCa-UGGgCCAGGGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.