miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10903 5' -59 NC_002794.1 + 9576 1.06 0.003287
Target:  5'- gACACUUAGCCCGUACCCGGUCCCGGUc -3'
miRNA:   3'- -UGUGAAUCGGGCAUGGGCCAGGGCCA- -5'
10903 5' -59 NC_002794.1 + 9628 0.9 0.040994
Target:  5'- gACAUUUAGCCCGUGCCCGGUCUCGa- -3'
miRNA:   3'- -UGUGAAUCGGGCAUGGGCCAGGGCca -5'
10903 5' -59 NC_002794.1 + 9490 0.89 0.04552
Target:  5'- gACACUUAGUCCGUGCCCGGUCUCGa- -3'
miRNA:   3'- -UGUGAAUCGGGCAUGGGCCAGGGCca -5'
10903 5' -59 NC_002794.1 + 9449 0.83 0.112083
Target:  5'- -gACUUAGCCCGUAUCCGGUCUCGa- -3'
miRNA:   3'- ugUGAAUCGGGCAUGGGCCAGGGCca -5'
10903 5' -59 NC_002794.1 + 9533 0.83 0.12393
Target:  5'- gACACUUAGCCCGUGCCCGaUCUCGa- -3'
miRNA:   3'- -UGUGAAUCGGGCAUGGGCcAGGGCca -5'
10903 5' -59 NC_002794.1 + 186014 0.78 0.249881
Target:  5'- cCGCUccgGGCCCGgGCCCGGaCCCGGg -3'
miRNA:   3'- uGUGAa--UCGGGCaUGGGCCaGGGCCa -5'
10903 5' -59 NC_002794.1 + 36725 0.74 0.41937
Target:  5'- gGCGCUcgcgcAGCCCGUucacguagaacuCCCGGUCCUGGc -3'
miRNA:   3'- -UGUGAa----UCGGGCAu-----------GGGCCAGGGCCa -5'
10903 5' -59 NC_002794.1 + 118398 0.7 0.606818
Target:  5'- gGCGCUcAGCCCGUagcacugcACCCGGaacuccUCCuCGGa -3'
miRNA:   3'- -UGUGAaUCGGGCA--------UGGGCC------AGG-GCCa -5'
10903 5' -59 NC_002794.1 + 116812 0.69 0.665826
Target:  5'- gGCGCcgUAGCgCGggucGCuCUGGUCCCGGg -3'
miRNA:   3'- -UGUGa-AUCGgGCa---UG-GGCCAGGGCCa -5'
10903 5' -59 NC_002794.1 + 62813 0.69 0.675616
Target:  5'- gGCACgccGGCgCCGUacuuucGCCCGGUCCCc-- -3'
miRNA:   3'- -UGUGaa-UCG-GGCA------UGGGCCAGGGcca -5'
10903 5' -59 NC_002794.1 + 32166 0.69 0.695088
Target:  5'- -aGCggUGGCCCGccuggcCCCGGUCCCGc- -3'
miRNA:   3'- ugUGa-AUCGGGCau----GGGCCAGGGCca -5'
10903 5' -59 NC_002794.1 + 135496 0.68 0.714365
Target:  5'- cGCGCgcgGGCCCGaUGCCCGcacaCCGGa -3'
miRNA:   3'- -UGUGaa-UCGGGC-AUGGGCcag-GGCCa -5'
10903 5' -59 NC_002794.1 + 145334 0.68 0.722959
Target:  5'- gGCGCUcgGGCCCGagcggGCCCgagcuggggguguGGUCaCCGGg -3'
miRNA:   3'- -UGUGAa-UCGGGCa----UGGG-------------CCAG-GGCCa -5'
10903 5' -59 NC_002794.1 + 83005 0.68 0.733383
Target:  5'- cGCACgc-GCCCGaucugcGCCCcGUCCCGGc -3'
miRNA:   3'- -UGUGaauCGGGCa-----UGGGcCAGGGCCa -5'
10903 5' -59 NC_002794.1 + 136707 0.68 0.733383
Target:  5'- ------cGCCCGgugcagGCgCCGGUCCCGGc -3'
miRNA:   3'- ugugaauCGGGCa-----UG-GGCCAGGGCCa -5'
10903 5' -59 NC_002794.1 + 181819 0.68 0.733383
Target:  5'- cGCACgucggGGUUCGcgGCCaGGUCCCGGg -3'
miRNA:   3'- -UGUGaa---UCGGGCa-UGGgCCAGGGCCa -5'
10903 5' -59 NC_002794.1 + 115836 0.68 0.742774
Target:  5'- -gGCggGGCCCGgcggGCUCGGgCCUGGg -3'
miRNA:   3'- ugUGaaUCGGGCa---UGGGCCaGGGCCa -5'
10903 5' -59 NC_002794.1 + 30065 0.68 0.749295
Target:  5'- cCGCggGGUCCGgucGCCCGGUCgacgaggcgcgcggCCGGUc -3'
miRNA:   3'- uGUGaaUCGGGCa--UGGGCCAG--------------GGCCA- -5'
10903 5' -59 NC_002794.1 + 191072 0.68 0.752076
Target:  5'- gACACUc-GCCCGccGCCCGGUCCa--- -3'
miRNA:   3'- -UGUGAauCGGGCa-UGGGCCAGGgcca -5'
10903 5' -59 NC_002794.1 + 84178 0.68 0.752076
Target:  5'- aGCGCUcGGCCCGgcGCUCGG-CCCGc- -3'
miRNA:   3'- -UGUGAaUCGGGCa-UGGGCCaGGGCca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.