miRNA display CGI


Results 1 - 20 of 35 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10903 5' -59 NC_002794.1 + 488 0.67 0.810635
Target:  5'- gGCGUUUAGCCCGUcGCCUGGguggggcguugccUCCGGUu -3'
miRNA:   3'- -UGUGAAUCGGGCA-UGGGCCa------------GGGCCA- -5'
10903 5' -59 NC_002794.1 + 8155 0.67 0.776678
Target:  5'- cCGCUUcuccuucucccccgGGCCCGgcgucccGCCCGGUuucccaCCCGGg -3'
miRNA:   3'- uGUGAA--------------UCGGGCa------UGGGCCA------GGGCCa -5'
10903 5' -59 NC_002794.1 + 9449 0.83 0.112083
Target:  5'- -gACUUAGCCCGUAUCCGGUCUCGa- -3'
miRNA:   3'- ugUGAAUCGGGCAUGGGCCAGGGCca -5'
10903 5' -59 NC_002794.1 + 9490 0.89 0.04552
Target:  5'- gACACUUAGUCCGUGCCCGGUCUCGa- -3'
miRNA:   3'- -UGUGAAUCGGGCAUGGGCCAGGGCca -5'
10903 5' -59 NC_002794.1 + 9533 0.83 0.12393
Target:  5'- gACACUUAGCCCGUGCCCGaUCUCGa- -3'
miRNA:   3'- -UGUGAAUCGGGCAUGGGCcAGGGCca -5'
10903 5' -59 NC_002794.1 + 9576 1.06 0.003287
Target:  5'- gACACUUAGCCCGUACCCGGUCCCGGUc -3'
miRNA:   3'- -UGUGAAUCGGGCAUGGGCCAGGGCCA- -5'
10903 5' -59 NC_002794.1 + 9628 0.9 0.040994
Target:  5'- gACAUUUAGCCCGUGCCCGGUCUCGa- -3'
miRNA:   3'- -UGUGAAUCGGGCAUGGGCCAGGGCca -5'
10903 5' -59 NC_002794.1 + 20600 0.67 0.796954
Target:  5'- uGCGCUccguGCCCGgcuucgagaUGCCCGGcUCCGGc -3'
miRNA:   3'- -UGUGAau--CGGGC---------AUGGGCCaGGGCCa -5'
10903 5' -59 NC_002794.1 + 30065 0.68 0.749295
Target:  5'- cCGCggGGUCCGgucGCCCGGUCgacgaggcgcgcggCCGGUc -3'
miRNA:   3'- uGUGaaUCGGGCa--UGGGCCAG--------------GGCCA- -5'
10903 5' -59 NC_002794.1 + 32166 0.69 0.695088
Target:  5'- -aGCggUGGCCCGccuggcCCCGGUCCCGc- -3'
miRNA:   3'- ugUGa-AUCGGGCau----GGGCCAGGGCca -5'
10903 5' -59 NC_002794.1 + 36725 0.74 0.41937
Target:  5'- gGCGCUcgcgcAGCCCGUucacguagaacuCCCGGUCCUGGc -3'
miRNA:   3'- -UGUGAa----UCGGGCAu-----------GGGCCAGGGCCa -5'
10903 5' -59 NC_002794.1 + 48701 0.66 0.861237
Target:  5'- uCACgucGGCCCaGUACUCGGUgCgCGGa -3'
miRNA:   3'- uGUGaa-UCGGG-CAUGGGCCAgG-GCCa -5'
10903 5' -59 NC_002794.1 + 62813 0.69 0.675616
Target:  5'- gGCACgccGGCgCCGUacuuucGCCCGGUCCCc-- -3'
miRNA:   3'- -UGUGaa-UCG-GGCA------UGGGCCAGGGcca -5'
10903 5' -59 NC_002794.1 + 83005 0.68 0.733383
Target:  5'- cGCACgc-GCCCGaucugcGCCCcGUCCCGGc -3'
miRNA:   3'- -UGUGaauCGGGCa-----UGGGcCAGGGCCa -5'
10903 5' -59 NC_002794.1 + 84178 0.68 0.752076
Target:  5'- aGCGCUcGGCCCGgcGCUCGG-CCCGc- -3'
miRNA:   3'- -UGUGAaUCGGGCa-UGGGCCaGGGCca -5'
10903 5' -59 NC_002794.1 + 88568 0.66 0.861237
Target:  5'- gGCACUUuucGUCCGUACguaucgaucuuCCGGgUCCGGUu -3'
miRNA:   3'- -UGUGAAu--CGGGCAUG-----------GGCCaGGGCCA- -5'
10903 5' -59 NC_002794.1 + 100585 0.67 0.788223
Target:  5'- cACGCUcGGgCCGUGCgcgCCGaUCCCGGg -3'
miRNA:   3'- -UGUGAaUCgGGCAUG---GGCcAGGGCCa -5'
10903 5' -59 NC_002794.1 + 114668 0.66 0.846192
Target:  5'- cGCGCgc-GCCgGUACUCGGaccgcagggCCCGGa -3'
miRNA:   3'- -UGUGaauCGGgCAUGGGCCa--------GGGCCa -5'
10903 5' -59 NC_002794.1 + 114751 0.67 0.779361
Target:  5'- gGCGCc--GCCCGccgGCgCCGGUCCuCGGc -3'
miRNA:   3'- -UGUGaauCGGGCa--UG-GGCCAGG-GCCa -5'
10903 5' -59 NC_002794.1 + 115836 0.68 0.742774
Target:  5'- -gGCggGGCCCGgcggGCUCGGgCCUGGg -3'
miRNA:   3'- ugUGaaUCGGGCa---UGGGCCaGGGCCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.