miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10904 3' -55.2 NC_002794.1 + 184502 0.66 0.961123
Target:  5'- gCCcGGGCggcgcggGC-CCCGCGCGcggcgcggGCGACg -3'
miRNA:   3'- aGGaCUCGa------UGuGGGCGUGCa-------UGCUG- -5'
10904 3' -55.2 NC_002794.1 + 104313 0.66 0.961123
Target:  5'- aCUUGAGgUugGCCgCGCA-GUACGGg -3'
miRNA:   3'- aGGACUCgAugUGG-GCGUgCAUGCUg -5'
10904 3' -55.2 NC_002794.1 + 60159 0.66 0.961123
Target:  5'- uUCC--AGCUGCccaacaGCCCGCGCGggcgcuCGGCc -3'
miRNA:   3'- -AGGacUCGAUG------UGGGCGUGCau----GCUG- -5'
10904 3' -55.2 NC_002794.1 + 68261 0.66 0.957539
Target:  5'- cUCCUGcAGCUguucgacgaGCACcgggccagCCGgGCGUACGAa -3'
miRNA:   3'- -AGGAC-UCGA---------UGUG--------GGCgUGCAUGCUg -5'
10904 3' -55.2 NC_002794.1 + 58131 0.66 0.957539
Target:  5'- cCCUGGGCgGCcugGCCCGCcgccuCGUGCa-- -3'
miRNA:   3'- aGGACUCGaUG---UGGGCGu----GCAUGcug -5'
10904 3' -55.2 NC_002794.1 + 33660 0.66 0.957539
Target:  5'- -gCUGAGCgUGCACUCGCGCucGCuGCg -3'
miRNA:   3'- agGACUCG-AUGUGGGCGUGcaUGcUG- -5'
10904 3' -55.2 NC_002794.1 + 117359 0.66 0.957539
Target:  5'- aUCUcguugGAGCggcgggcCGCCUGCACGgucGCGGCg -3'
miRNA:   3'- -AGGa----CUCGau-----GUGGGCGUGCa--UGCUG- -5'
10904 3' -55.2 NC_002794.1 + 57087 0.66 0.957169
Target:  5'- -aCUGuGCUGCGCaCCGUcaagaacACGgcCGACg -3'
miRNA:   3'- agGACuCGAUGUG-GGCG-------UGCauGCUG- -5'
10904 3' -55.2 NC_002794.1 + 90349 0.66 0.953736
Target:  5'- gCCUGuGCguccugUGCACCgUGCGCGUGCa-- -3'
miRNA:   3'- aGGACuCG------AUGUGG-GCGUGCAUGcug -5'
10904 3' -55.2 NC_002794.1 + 13906 0.66 0.953736
Target:  5'- gUCUUGAGuCUGC-UCUGCAcCGUcGCGGCg -3'
miRNA:   3'- -AGGACUC-GAUGuGGGCGU-GCA-UGCUG- -5'
10904 3' -55.2 NC_002794.1 + 12710 0.66 0.94971
Target:  5'- gCCgUGGGCUGCGCguuCCGCG---GCGACg -3'
miRNA:   3'- aGG-ACUCGAUGUG---GGCGUgcaUGCUG- -5'
10904 3' -55.2 NC_002794.1 + 20723 0.66 0.94971
Target:  5'- aCCUGGGCUggcAgACCC---UGUGCGACg -3'
miRNA:   3'- aGGACUCGA---UgUGGGcguGCAUGCUG- -5'
10904 3' -55.2 NC_002794.1 + 51031 0.66 0.94971
Target:  5'- cUCCUGcaacaGGCUAUucauCCCGUccgagACGgcgGCGACg -3'
miRNA:   3'- -AGGAC-----UCGAUGu---GGGCG-----UGCa--UGCUG- -5'
10904 3' -55.2 NC_002794.1 + 45026 0.66 0.94971
Target:  5'- gCCggGuGCUccGCACCCaGCGCGgugGCGAg -3'
miRNA:   3'- aGGa-CuCGA--UGUGGG-CGUGCa--UGCUg -5'
10904 3' -55.2 NC_002794.1 + 184445 0.66 0.94971
Target:  5'- aUCUGAGCgcgccGCugCCGCccgcgggccgcGCGaACGGCg -3'
miRNA:   3'- aGGACUCGa----UGugGGCG-----------UGCaUGCUG- -5'
10904 3' -55.2 NC_002794.1 + 179661 0.66 0.945457
Target:  5'- ---cGGGCUcgccggacgGCACCCGCGgCG-GCGACg -3'
miRNA:   3'- aggaCUCGA---------UGUGGGCGU-GCaUGCUG- -5'
10904 3' -55.2 NC_002794.1 + 81950 0.66 0.945457
Target:  5'- cUCCUGcGCcaucgcgGCGCCCGCccgcuucccggACGcGCGACc -3'
miRNA:   3'- -AGGACuCGa------UGUGGGCG-----------UGCaUGCUG- -5'
10904 3' -55.2 NC_002794.1 + 13532 0.67 0.940975
Target:  5'- aCCUGAGCUGuaacgucaGCUCGCACGcg-GGCu -3'
miRNA:   3'- aGGACUCGAUg-------UGGGCGUGCaugCUG- -5'
10904 3' -55.2 NC_002794.1 + 59690 0.67 0.940975
Target:  5'- aCCcGGGCUuCGCCCucacGCugGUGCGcACc -3'
miRNA:   3'- aGGaCUCGAuGUGGG----CGugCAUGC-UG- -5'
10904 3' -55.2 NC_002794.1 + 8931 0.67 0.940975
Target:  5'- gCCgu-GC-GCACCUGCACGaucgACGGCg -3'
miRNA:   3'- aGGacuCGaUGUGGGCGUGCa---UGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.