miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10905 3' -59.3 NC_002794.1 + 19911 0.66 0.845231
Target:  5'- cGACCUGACCCGccuGCaguacacgcgcacgcUGUUCaCGGAagACg -3'
miRNA:   3'- -CUGGACUGGGC---CG---------------ACAAG-GCCUggUG- -5'
10905 3' -59.3 NC_002794.1 + 85429 0.66 0.842118
Target:  5'- cGCCcGACCCaagaGCU--UCUGGGCCGCg -3'
miRNA:   3'- cUGGaCUGGGc---CGAcaAGGCCUGGUG- -5'
10905 3' -59.3 NC_002794.1 + 83957 0.66 0.834215
Target:  5'- cGCCUGGgCCGcCUGgagcgcCUGGACCGCc -3'
miRNA:   3'- cUGGACUgGGCcGACaa----GGCCUGGUG- -5'
10905 3' -59.3 NC_002794.1 + 17256 0.66 0.834215
Target:  5'- cGGCggcGACCCGGCUcGUcacCCGGGCaCGCc -3'
miRNA:   3'- -CUGga-CUGGGCCGA-CAa--GGCCUG-GUG- -5'
10905 3' -59.3 NC_002794.1 + 23609 0.66 0.82614
Target:  5'- cGACCcGACCCcgcgGGCgc--CCGGACgCGCg -3'
miRNA:   3'- -CUGGaCUGGG----CCGacaaGGCCUG-GUG- -5'
10905 3' -59.3 NC_002794.1 + 71619 0.66 0.82614
Target:  5'- cGCUUGACCCGGUaGUaCCaGGCCcCg -3'
miRNA:   3'- cUGGACUGGGCCGaCAaGGcCUGGuG- -5'
10905 3' -59.3 NC_002794.1 + 83015 0.66 0.82614
Target:  5'- cGAUCUGcgccccguCCCGGCg---CCGGGCgGCa -3'
miRNA:   3'- -CUGGACu-------GGGCCGacaaGGCCUGgUG- -5'
10905 3' -59.3 NC_002794.1 + 190637 0.66 0.82614
Target:  5'- cGCCguaGCCCGGCgUGUgcaGGAUCACg -3'
miRNA:   3'- cUGGac-UGGGCCG-ACAaggCCUGGUG- -5'
10905 3' -59.3 NC_002794.1 + 186276 0.66 0.817902
Target:  5'- cGCCUGGCgCGGCgGcaCCGcGGCCAg -3'
miRNA:   3'- cUGGACUGgGCCGaCaaGGC-CUGGUg -5'
10905 3' -59.3 NC_002794.1 + 94089 0.66 0.817902
Target:  5'- cGACCUG-UCgGcGCUGUUCCuGGACguCg -3'
miRNA:   3'- -CUGGACuGGgC-CGACAAGG-CCUGguG- -5'
10905 3' -59.3 NC_002794.1 + 114361 0.66 0.809506
Target:  5'- cGCCaGGgCCGGCUGca--GGGCCGCg -3'
miRNA:   3'- cUGGaCUgGGCCGACaaggCCUGGUG- -5'
10905 3' -59.3 NC_002794.1 + 79168 0.66 0.809506
Target:  5'- -uCCUGGCCCGGUcc--CCGaccGACCACu -3'
miRNA:   3'- cuGGACUGGGCCGacaaGGC---CUGGUG- -5'
10905 3' -59.3 NC_002794.1 + 63077 0.66 0.804397
Target:  5'- -uCCUGGgCCGGCUGUacuucagcgcgcugCCGcACCGCg -3'
miRNA:   3'- cuGGACUgGGCCGACAa-------------GGCcUGGUG- -5'
10905 3' -59.3 NC_002794.1 + 115831 0.66 0.800961
Target:  5'- gGAUCggcggGGCCCGGCgGgcUCGGGCCu- -3'
miRNA:   3'- -CUGGa----CUGGGCCGaCaaGGCCUGGug -5'
10905 3' -59.3 NC_002794.1 + 138179 0.66 0.800961
Target:  5'- -uCUUGACCuCGGCggccagCCGGuCCACg -3'
miRNA:   3'- cuGGACUGG-GCCGacaa--GGCCuGGUG- -5'
10905 3' -59.3 NC_002794.1 + 694 0.67 0.783453
Target:  5'- cGGCCgGAgUCGGCUGuUUuuGGGCCu- -3'
miRNA:   3'- -CUGGaCUgGGCCGAC-AAggCCUGGug -5'
10905 3' -59.3 NC_002794.1 + 113545 0.67 0.774506
Target:  5'- cGCC-GGCCCGGagcagGcgCCGGACCGu -3'
miRNA:   3'- cUGGaCUGGGCCga---CaaGGCCUGGUg -5'
10905 3' -59.3 NC_002794.1 + 179155 0.67 0.759947
Target:  5'- uACCaGACCUGGUggacgcgacaggucGUcCCGGACCACc -3'
miRNA:   3'- cUGGaCUGGGCCGa-------------CAaGGCCUGGUG- -5'
10905 3' -59.3 NC_002794.1 + 63703 0.67 0.756264
Target:  5'- cGACgacGGCgCCGGCgccgCCGGACCGCc -3'
miRNA:   3'- -CUGga-CUG-GGCCGacaaGGCCUGGUG- -5'
10905 3' -59.3 NC_002794.1 + 86546 0.67 0.746987
Target:  5'- gGGCC-GAgCCGGgacggaUGcUCCGGGCCGCg -3'
miRNA:   3'- -CUGGaCUgGGCCg-----ACaAGGCCUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.