miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10906 3' -60.3 NC_002794.1 + 182077 0.66 0.850972
Target:  5'- gUCCGGUCGgCCAC-CGccagccAGCGuucuUCGCGg -3'
miRNA:   3'- gGGGCCAGUgGGUGaGC------UCGC----AGCGC- -5'
10906 3' -60.3 NC_002794.1 + 151690 0.66 0.850972
Target:  5'- aCUUgGGUCGCCCcgccgGC-CGAGCGcgccagUCGCGc -3'
miRNA:   3'- -GGGgCCAGUGGG-----UGaGCUCGC------AGCGC- -5'
10906 3' -60.3 NC_002794.1 + 50786 0.66 0.850972
Target:  5'- gUCUCGGgcggCGCCUcCUCGcccGGCGUCGgGc -3'
miRNA:   3'- -GGGGCCa---GUGGGuGAGC---UCGCAGCgC- -5'
10906 3' -60.3 NC_002794.1 + 147254 0.66 0.850972
Target:  5'- aCUCCGGgCAgaCGCUCGAGCuGcCGUGg -3'
miRNA:   3'- -GGGGCCaGUggGUGAGCUCG-CaGCGC- -5'
10906 3' -60.3 NC_002794.1 + 106238 0.66 0.843488
Target:  5'- gCUCgGGUCGCagaccgCCGCgaaccggCGAGCGcCGCGc -3'
miRNA:   3'- -GGGgCCAGUG------GGUGa------GCUCGCaGCGC- -5'
10906 3' -60.3 NC_002794.1 + 37950 0.66 0.843488
Target:  5'- gCCUCGGcgACUCGCUCG-GCGgcUCGUGg -3'
miRNA:   3'- -GGGGCCagUGGGUGAGCuCGC--AGCGC- -5'
10906 3' -60.3 NC_002794.1 + 13130 0.66 0.843488
Target:  5'- gCgCGGcUCGCUCGCgCGGGuCGUCGCc -3'
miRNA:   3'- gGgGCC-AGUGGGUGaGCUC-GCAGCGc -5'
10906 3' -60.3 NC_002794.1 + 110242 0.66 0.843488
Target:  5'- cCUCCgcggcggaGGUUuCCCGCgCG-GCGUCGCGa -3'
miRNA:   3'- -GGGG--------CCAGuGGGUGaGCuCGCAGCGC- -5'
10906 3' -60.3 NC_002794.1 + 69835 0.66 0.843488
Target:  5'- gCCCGGUcCGCUgGCUCaccGCcUCGCGa -3'
miRNA:   3'- gGGGCCA-GUGGgUGAGcu-CGcAGCGC- -5'
10906 3' -60.3 NC_002794.1 + 126113 0.66 0.843488
Target:  5'- gCCCUGGgCGCCgCGCUCGucuGCGcCGg- -3'
miRNA:   3'- -GGGGCCaGUGG-GUGAGCu--CGCaGCgc -5'
10906 3' -60.3 NC_002794.1 + 68861 0.66 0.838917
Target:  5'- aCCCCGGagcucgggcUCGccggccucgcccguuCCCACggcuacCGAucGCGUCGCGg -3'
miRNA:   3'- -GGGGCC---------AGU---------------GGGUGa-----GCU--CGCAGCGC- -5'
10906 3' -60.3 NC_002794.1 + 70631 0.66 0.835836
Target:  5'- gCCCCGGUCGCaCCGCcaccagguucUUGGccuCGUgCGCGg -3'
miRNA:   3'- -GGGGCCAGUG-GGUG----------AGCUc--GCA-GCGC- -5'
10906 3' -60.3 NC_002794.1 + 8188 0.66 0.835836
Target:  5'- gCCCGGUUuCCCACcCGGGCaaacaacUGCGg -3'
miRNA:   3'- gGGGCCAGuGGGUGaGCUCGca-----GCGC- -5'
10906 3' -60.3 NC_002794.1 + 187444 0.66 0.835836
Target:  5'- gCCgCGccGUCugCCgccGCUCG-GCGUCGCu -3'
miRNA:   3'- -GGgGC--CAGugGG---UGAGCuCGCAGCGc -5'
10906 3' -60.3 NC_002794.1 + 111573 0.66 0.835836
Target:  5'- gCgCGGUCACUacgguggccaGCUCGAGCGggGUGa -3'
miRNA:   3'- gGgGCCAGUGGg---------UGAGCUCGCagCGC- -5'
10906 3' -60.3 NC_002794.1 + 86914 0.66 0.831166
Target:  5'- aCCCGGUgaCGCCCguggcgggcagGCggggcgggauccggCGAGCGUCGaCGu -3'
miRNA:   3'- gGGGCCA--GUGGG-----------UGa-------------GCUCGCAGC-GC- -5'
10906 3' -60.3 NC_002794.1 + 132296 0.66 0.82802
Target:  5'- aCUCGGUCACCgUAUUCcacAGCGUgGUGa -3'
miRNA:   3'- gGGGCCAGUGG-GUGAGc--UCGCAgCGC- -5'
10906 3' -60.3 NC_002794.1 + 141594 0.66 0.82802
Target:  5'- gCCCGcGUCGCCgggcgGCUCG-GCGaccggcUCGCGg -3'
miRNA:   3'- gGGGC-CAGUGGg----UGAGCuCGC------AGCGC- -5'
10906 3' -60.3 NC_002794.1 + 113515 0.66 0.82802
Target:  5'- gCCgCGGagggagcucCGCCgGCUCG-GCGUCGCc -3'
miRNA:   3'- -GGgGCCa--------GUGGgUGAGCuCGCAGCGc -5'
10906 3' -60.3 NC_002794.1 + 137088 0.66 0.82802
Target:  5'- gCCauGUCGCCCGCUCGcGCuccuucCGCGa -3'
miRNA:   3'- gGGgcCAGUGGGUGAGCuCGca----GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.