Results 41 - 60 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10906 | 3' | -60.3 | NC_002794.1 | + | 85022 | 0.67 | 0.778075 |
Target: 5'- gCCCCGG--GCCCacGCUCGGGUGccUCGgGc -3' miRNA: 3'- -GGGGCCagUGGG--UGAGCUCGC--AGCgC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 151027 | 0.67 | 0.792713 |
Target: 5'- gCCCgUGGUCGCCCGuCUgaugacgggCGAGUgcacggccgcgcagGUCGCGg -3' miRNA: 3'- -GGG-GCCAGUGGGU-GA---------GCUCG--------------CAGCGC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 133747 | 0.67 | 0.795259 |
Target: 5'- gUUCGGUCGCCUgcagggucccgACUCGAcCGcUCGCGa -3' miRNA: 3'- gGGGCCAGUGGG-----------UGAGCUcGC-AGCGC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 185562 | 0.67 | 0.778075 |
Target: 5'- gCCCCGccCugCCGCggcaGGGCG-CGCGg -3' miRNA: 3'- -GGGGCcaGugGGUGag--CUCGCaGCGC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 42927 | 0.67 | 0.786728 |
Target: 5'- gUCCgGGUCAcgauCCCGCUCGccaUGUCGCc -3' miRNA: 3'- -GGGgCCAGU----GGGUGAGCuc-GCAGCGc -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 187916 | 0.67 | 0.786728 |
Target: 5'- cCCgCCGGgC-CCCGCcgCGAcCGUCGCGu -3' miRNA: 3'- -GG-GGCCaGuGGGUGa-GCUcGCAGCGC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 193059 | 0.68 | 0.695932 |
Target: 5'- gCCCG--CACCgGCUgCGGGcCGUCGCGg -3' miRNA: 3'- gGGGCcaGUGGgUGA-GCUC-GCAGCGC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 185929 | 0.68 | 0.695932 |
Target: 5'- aCCgCCGGcCACCCGC-CaGGC-UCGCGg -3' miRNA: 3'- -GG-GGCCaGUGGGUGaGcUCGcAGCGC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 11711 | 0.68 | 0.705347 |
Target: 5'- gCUCGGUCGgCCACUUGcAGCuGUgGCa -3' miRNA: 3'- gGGGCCAGUgGGUGAGC-UCG-CAgCGc -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 152144 | 0.68 | 0.724006 |
Target: 5'- -gCCGGUUcaACCCGCUCcAGCGcCuGCGg -3' miRNA: 3'- ggGGCCAG--UGGGUGAGcUCGCaG-CGC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 90964 | 0.68 | 0.724006 |
Target: 5'- gCCCGG--GCCCGCUUcGGCGUgGCc -3' miRNA: 3'- gGGGCCagUGGGUGAGcUCGCAgCGc -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 42211 | 0.68 | 0.705347 |
Target: 5'- gCCgCCGGUCugCCGCUgGAucaGcCGCGa -3' miRNA: 3'- -GG-GGCCAGugGGUGAgCUcg-CaGCGC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 111629 | 0.68 | 0.724006 |
Target: 5'- gCCgCGGcCGCcgCCGgUCGGGCGcCGCGg -3' miRNA: 3'- -GGgGCCaGUG--GGUgAGCUCGCaGCGC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 143719 | 0.68 | 0.733235 |
Target: 5'- gCCCCGGcgggcgucguccUCGCCCGC-CGGacGCGcCGCc -3' miRNA: 3'- -GGGGCC------------AGUGGGUGaGCU--CGCaGCGc -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 143276 | 0.68 | 0.742388 |
Target: 5'- gCCCGG-CGCCgGCcgcucggggUCGGGCGggugcagCGCGg -3' miRNA: 3'- gGGGCCaGUGGgUG---------AGCUCGCa------GCGC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 107212 | 0.68 | 0.733235 |
Target: 5'- gCCCGG-CG-CCGC-CGGGCGgcgCGCGa -3' miRNA: 3'- gGGGCCaGUgGGUGaGCUCGCa--GCGC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 35550 | 0.68 | 0.733235 |
Target: 5'- aCCCGG-CGCUCGCgcgCGcGCGUgGUGg -3' miRNA: 3'- gGGGCCaGUGGGUGa--GCuCGCAgCGC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 108866 | 0.69 | 0.676968 |
Target: 5'- gCgCGGUCACCggguccaACUCG-GCGUgCGCGg -3' miRNA: 3'- gGgGCCAGUGGg------UGAGCuCGCA-GCGC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 66953 | 0.69 | 0.676968 |
Target: 5'- cCCUCGaggccggcgaGUCGCUCGCcggggGAGCGUCGCGa -3' miRNA: 3'- -GGGGC----------CAGUGGGUGag---CUCGCAGCGC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 185335 | 0.69 | 0.657876 |
Target: 5'- aCCCGcGUCGaCCGCUCGcGCGcCGCc -3' miRNA: 3'- gGGGC-CAGUgGGUGAGCuCGCaGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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