Results 81 - 98 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10906 | 3' | -60.3 | NC_002794.1 | + | 46190 | 0.71 | 0.56237 |
Target: 5'- aCCCCGG-CACCgCGCUCGcuCGcCGCc -3' miRNA: 3'- -GGGGCCaGUGG-GUGAGCucGCaGCGc -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 19481 | 0.71 | 0.552961 |
Target: 5'- cCCgCCGGUCGCCCGCaccgaCGAcgGCGgaggUCGCGc -3' miRNA: 3'- -GG-GGCCAGUGGGUGa----GCU--CGC----AGCGC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 185308 | 0.71 | 0.56237 |
Target: 5'- aCCCGGUCGCCC-C---AGUGUCGCc -3' miRNA: 3'- gGGGCCAGUGGGuGagcUCGCAGCGc -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 77923 | 0.72 | 0.514935 |
Target: 5'- aCCCGGUCcgccgaaACCCGC-CGgaGGCGcCGCGa -3' miRNA: 3'- gGGGCCAG-------UGGGUGaGC--UCGCaGCGC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 123994 | 0.72 | 0.497671 |
Target: 5'- gCgCCGGUCAUCUACgugaagCGGGCGgcCGCGg -3' miRNA: 3'- -GgGGCCAGUGGGUGa-----GCUCGCa-GCGC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 251 | 0.72 | 0.515851 |
Target: 5'- aCCCCGGaCugCCGC-CGcGCG-CGCGg -3' miRNA: 3'- -GGGGCCaGugGGUGaGCuCGCaGCGC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 138517 | 0.72 | 0.515851 |
Target: 5'- gUCCCGGUCGCuUCGCUCGuuCGcUCGCu -3' miRNA: 3'- -GGGGCCAGUG-GGUGAGCucGC-AGCGc -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 179106 | 0.73 | 0.453564 |
Target: 5'- gUCCGGUCGUCCGCggucCGGGCG-CGCGg -3' miRNA: 3'- gGGGCCAGUGGGUGa---GCUCGCaGCGC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 128561 | 0.74 | 0.387708 |
Target: 5'- -gCUGGUCAUCgCGCUCG-GCGUCGUGu -3' miRNA: 3'- ggGGCCAGUGG-GUGAGCuCGCAGCGC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 24062 | 0.75 | 0.327066 |
Target: 5'- gCCCCGGaccacacccgugCGCCCGggCGGGCGUCGCc -3' miRNA: 3'- -GGGGCCa-----------GUGGGUgaGCUCGCAGCGc -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 182379 | 0.75 | 0.342623 |
Target: 5'- cCCCCGGUCcCCCGCUC-AGCGgaaccaCGCc -3' miRNA: 3'- -GGGGCCAGuGGGUGAGcUCGCa-----GCGc -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 30072 | 0.77 | 0.258355 |
Target: 5'- gUCCGGUCGCCCGgUCGAcgagGCG-CGCGg -3' miRNA: 3'- gGGGCCAGUGGGUgAGCU----CGCaGCGC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 193802 | 0.77 | 0.274957 |
Target: 5'- aCgCCGG-CGCCCGCUCGucuggcgccgacGCGUCGCGg -3' miRNA: 3'- -GgGGCCaGUGGGUGAGCu-----------CGCAGCGC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 22373 | 0.82 | 0.137412 |
Target: 5'- aCCCCGGUCccgAUCCGgUCGGGCGUCGUc -3' miRNA: 3'- -GGGGCCAG---UGGGUgAGCUCGCAGCGc -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 38402 | 0.82 | 0.134124 |
Target: 5'- gUCCCGGUCACCCGg-CGAGCGcUCGCc -3' miRNA: 3'- -GGGGCCAGUGGGUgaGCUCGC-AGCGc -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 50820 | 0.82 | 0.127764 |
Target: 5'- gCUCCGG-CGCCCccgccCUCGGGCGUCGCGa -3' miRNA: 3'- -GGGGCCaGUGGGu----GAGCUCGCAGCGC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 119791 | 0.87 | 0.067038 |
Target: 5'- gCUCCGGUcCGCCgACUUGAGCGUCGCGu -3' miRNA: 3'- -GGGGCCA-GUGGgUGAGCUCGCAGCGC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 7569 | 1.1 | 0.001801 |
Target: 5'- aCCCCGGUCACCCACUCGAGCGUCGCGu -3' miRNA: 3'- -GGGGCCAGUGGGUGAGCUCGCAGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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