miRNA display CGI


Results 61 - 80 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10906 3' -60.3 NC_002794.1 + 130509 0.67 0.760431
Target:  5'- gCgCC--UCGCCCACUCGAGCGggcugacCGUGa -3'
miRNA:   3'- -GgGGccAGUGGGUGAGCUCGCa------GCGC- -5'
10906 3' -60.3 NC_002794.1 + 58089 0.67 0.760431
Target:  5'- gCCCGG-CGCCCgcGCUCGAcCGcUGCGu -3'
miRNA:   3'- gGGGCCaGUGGG--UGAGCUcGCaGCGC- -5'
10906 3' -60.3 NC_002794.1 + 8714 0.67 0.763993
Target:  5'- gCCCCGGguccaCACCCcccagaccguggagcGCgugucUCGGGCGugUCGCGa -3'
miRNA:   3'- -GGGGCCa----GUGGG---------------UG-----AGCUCGC--AGCGC- -5'
10906 3' -60.3 NC_002794.1 + 109518 0.67 0.778075
Target:  5'- gCCCGG-C-CCgCGCUCGuucGGCGUCGgGc -3'
miRNA:   3'- gGGGCCaGuGG-GUGAGC---UCGCAGCgC- -5'
10906 3' -60.3 NC_002794.1 + 187444 0.66 0.835836
Target:  5'- gCCgCGccGUCugCCgccGCUCG-GCGUCGCu -3'
miRNA:   3'- -GGgGC--CAGugGG---UGAGCuCGCAGCGc -5'
10906 3' -60.3 NC_002794.1 + 69835 0.66 0.843488
Target:  5'- gCCCGGUcCGCUgGCUCaccGCcUCGCGa -3'
miRNA:   3'- gGGGCCA-GUGGgUGAGcu-CGcAGCGC- -5'
10906 3' -60.3 NC_002794.1 + 70631 0.66 0.835836
Target:  5'- gCCCCGGUCGCaCCGCcaccagguucUUGGccuCGUgCGCGg -3'
miRNA:   3'- -GGGGCCAGUG-GGUG----------AGCUc--GCA-GCGC- -5'
10906 3' -60.3 NC_002794.1 + 110242 0.66 0.843488
Target:  5'- cCUCCgcggcggaGGUUuCCCGCgCG-GCGUCGCGa -3'
miRNA:   3'- -GGGG--------CCAGuGGGUGaGCuCGCAGCGC- -5'
10906 3' -60.3 NC_002794.1 + 50786 0.66 0.850972
Target:  5'- gUCUCGGgcggCGCCUcCUCGcccGGCGUCGgGc -3'
miRNA:   3'- -GGGGCCa---GUGGGuGAGC---UCGCAGCgC- -5'
10906 3' -60.3 NC_002794.1 + 56535 0.66 0.82802
Target:  5'- uUCCGGUCGCCa--UCcgGAGCGcUCGCc -3'
miRNA:   3'- gGGGCCAGUGGgugAG--CUCGC-AGCGc -5'
10906 3' -60.3 NC_002794.1 + 111573 0.66 0.835836
Target:  5'- gCgCGGUCACUacgguggccaGCUCGAGCGggGUGa -3'
miRNA:   3'- gGgGCCAGUGGg---------UGAGCUCGCagCGC- -5'
10906 3' -60.3 NC_002794.1 + 66209 0.66 0.825645
Target:  5'- uCCCCGGgaaagcUCACCUccucuccuucuucgGC-CGGGCGcUUGCGg -3'
miRNA:   3'- -GGGGCC------AGUGGG--------------UGaGCUCGC-AGCGC- -5'
10906 3' -60.3 NC_002794.1 + 182679 0.66 0.820048
Target:  5'- aCCCGGUC-CCCG---GAGCGcuUCGCu -3'
miRNA:   3'- gGGGCCAGuGGGUgagCUCGC--AGCGc -5'
10906 3' -60.3 NC_002794.1 + 14254 0.66 0.806984
Target:  5'- aCCgCCGGcUCgACCCcgaccgagguguucgGCUgGAGCGUCaGCGu -3'
miRNA:   3'- -GG-GGCC-AG-UGGG---------------UGAgCUCGCAG-CGC- -5'
10906 3' -60.3 NC_002794.1 + 124318 0.66 0.818436
Target:  5'- gCCCGGUCgaucgacccgcgACCCACgucCGAGCucucucucucucUCGCGu -3'
miRNA:   3'- gGGGCCAG------------UGGGUGa--GCUCGc-----------AGCGC- -5'
10906 3' -60.3 NC_002794.1 + 53241 0.66 0.811926
Target:  5'- uCCUCGGccCGCCgCGC-CG-GCGUCGCc -3'
miRNA:   3'- -GGGGCCa-GUGG-GUGaGCuCGCAGCGc -5'
10906 3' -60.3 NC_002794.1 + 75621 0.66 0.820048
Target:  5'- aUCCCGGUCugguACCCuuuCUCGcuacacacgAGCGgcaGCGg -3'
miRNA:   3'- -GGGGCCAG----UGGGu--GAGC---------UCGCag-CGC- -5'
10906 3' -60.3 NC_002794.1 + 46262 0.66 0.811926
Target:  5'- uCCUCGGgccgUCGacCCCACUcCGAGCGUUcCGa -3'
miRNA:   3'- -GGGGCC----AGU--GGGUGA-GCUCGCAGcGC- -5'
10906 3' -60.3 NC_002794.1 + 59650 0.66 0.803661
Target:  5'- uCCCCGGUCGCCacggCGCUgcaGAGCcgccugCGCc -3'
miRNA:   3'- -GGGGCCAGUGG----GUGAg--CUCGca----GCGc -5'
10906 3' -60.3 NC_002794.1 + 29750 0.66 0.803661
Target:  5'- -aCCGGgcgccgaGCCCGCgcCGAGCGUCuCGg -3'
miRNA:   3'- ggGGCCag-----UGGGUGa-GCUCGCAGcGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.