Results 81 - 98 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10906 | 3' | -60.3 | NC_002794.1 | + | 86914 | 0.66 | 0.831166 |
Target: 5'- aCCCGGUgaCGCCCguggcgggcagGCggggcgggauccggCGAGCGUCGaCGu -3' miRNA: 3'- gGGGCCA--GUGGG-----------UGa-------------GCUCGCAGC-GC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 132296 | 0.66 | 0.82802 |
Target: 5'- aCUCGGUCACCgUAUUCcacAGCGUgGUGa -3' miRNA: 3'- gGGGCCAGUGG-GUGAGc--UCGCAgCGC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 102628 | 0.66 | 0.803661 |
Target: 5'- aCCUggCGGUCAUCCGC-CGgcuGGCGgCGCGc -3' miRNA: 3'- -GGG--GCCAGUGGGUGaGC---UCGCaGCGC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 21441 | 0.66 | 0.803661 |
Target: 5'- aCgUCGGUCucGCgUCGCUCG-GCGUCGCc -3' miRNA: 3'- -GgGGCCAG--UG-GGUGAGCuCGCAGCGc -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 29750 | 0.66 | 0.803661 |
Target: 5'- -aCCGGgcgccgaGCCCGCgcCGAGCGUCuCGg -3' miRNA: 3'- ggGGCCag-----UGGGUGa-GCUCGCAGcGC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 59650 | 0.66 | 0.803661 |
Target: 5'- uCCCCGGUCGCCacggCGCUgcaGAGCcgccugCGCc -3' miRNA: 3'- -GGGGCCAGUGG----GUGAg--CUCGca----GCGc -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 14254 | 0.66 | 0.806984 |
Target: 5'- aCCgCCGGcUCgACCCcgaccgagguguucgGCUgGAGCGUCaGCGu -3' miRNA: 3'- -GG-GGCC-AG-UGGG---------------UGAgCUCGCAG-CGC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 124318 | 0.66 | 0.818436 |
Target: 5'- gCCCGGUCgaucgacccgcgACCCACgucCGAGCucucucucucucUCGCGu -3' miRNA: 3'- gGGGCCAG------------UGGGUGa--GCUCGc-----------AGCGC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 53241 | 0.66 | 0.811926 |
Target: 5'- uCCUCGGccCGCCgCGC-CG-GCGUCGCc -3' miRNA: 3'- -GGGGCCa-GUGG-GUGaGCuCGCAGCGc -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 46262 | 0.66 | 0.811926 |
Target: 5'- uCCUCGGgccgUCGacCCCACUcCGAGCGUUcCGa -3' miRNA: 3'- -GGGGCC----AGU--GGGUGA-GCUCGCAGcGC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 75621 | 0.66 | 0.820048 |
Target: 5'- aUCCCGGUCugguACCCuuuCUCGcuacacacgAGCGgcaGCGg -3' miRNA: 3'- -GGGGCCAG----UGGGu--GAGC---------UCGCag-CGC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 182679 | 0.66 | 0.820048 |
Target: 5'- aCCCGGUC-CCCG---GAGCGcuUCGCu -3' miRNA: 3'- gGGGCCAGuGGGUgagCUCGC--AGCGc -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 66209 | 0.66 | 0.825645 |
Target: 5'- uCCCCGGgaaagcUCACCUccucuccuucuucgGC-CGGGCGcUUGCGg -3' miRNA: 3'- -GGGGCC------AGUGGG--------------UGaGCUCGC-AGCGC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 56535 | 0.66 | 0.82802 |
Target: 5'- uUCCGGUCGCCa--UCcgGAGCGcUCGCc -3' miRNA: 3'- gGGGCCAGUGGgugAG--CUCGC-AGCGc -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 137088 | 0.66 | 0.82802 |
Target: 5'- gCCauGUCGCCCGCUCGcGCuccuucCGCGa -3' miRNA: 3'- gGGgcCAGUGGGUGAGCuCGca----GCGC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 113515 | 0.66 | 0.82802 |
Target: 5'- gCCgCGGagggagcucCGCCgGCUCG-GCGUCGCc -3' miRNA: 3'- -GGgGCCa--------GUGGgUGAGCuCGCAGCGc -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 141594 | 0.66 | 0.82802 |
Target: 5'- gCCCGcGUCGCCgggcgGCUCG-GCGaccggcUCGCGg -3' miRNA: 3'- gGGGC-CAGUGGg----UGAGCuCGC------AGCGC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 81400 | 0.66 | 0.803661 |
Target: 5'- gCUCCGGUC-CCgGCUCGGGagcugcUCGCc -3' miRNA: 3'- -GGGGCCAGuGGgUGAGCUCgc----AGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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