miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10906 3' -60.3 NC_002794.1 + 7569 1.1 0.001801
Target:  5'- aCCCCGGUCACCCACUCGAGCGUCGCGu -3'
miRNA:   3'- -GGGGCCAGUGGGUGAGCUCGCAGCGC- -5'
10906 3' -60.3 NC_002794.1 + 119791 0.87 0.067038
Target:  5'- gCUCCGGUcCGCCgACUUGAGCGUCGCGu -3'
miRNA:   3'- -GGGGCCA-GUGGgUGAGCUCGCAGCGC- -5'
10906 3' -60.3 NC_002794.1 + 50820 0.82 0.127764
Target:  5'- gCUCCGG-CGCCCccgccCUCGGGCGUCGCGa -3'
miRNA:   3'- -GGGGCCaGUGGGu----GAGCUCGCAGCGC- -5'
10906 3' -60.3 NC_002794.1 + 38402 0.82 0.134124
Target:  5'- gUCCCGGUCACCCGg-CGAGCGcUCGCc -3'
miRNA:   3'- -GGGGCCAGUGGGUgaGCUCGC-AGCGc -5'
10906 3' -60.3 NC_002794.1 + 22373 0.82 0.137412
Target:  5'- aCCCCGGUCccgAUCCGgUCGGGCGUCGUc -3'
miRNA:   3'- -GGGGCCAG---UGGGUgAGCUCGCAGCGc -5'
10906 3' -60.3 NC_002794.1 + 30072 0.77 0.258355
Target:  5'- gUCCGGUCGCCCGgUCGAcgagGCG-CGCGg -3'
miRNA:   3'- gGGGCCAGUGGGUgAGCU----CGCaGCGC- -5'
10906 3' -60.3 NC_002794.1 + 193802 0.77 0.274957
Target:  5'- aCgCCGG-CGCCCGCUCGucuggcgccgacGCGUCGCGg -3'
miRNA:   3'- -GgGGCCaGUGGGUGAGCu-----------CGCAGCGC- -5'
10906 3' -60.3 NC_002794.1 + 24062 0.75 0.327066
Target:  5'- gCCCCGGaccacacccgugCGCCCGggCGGGCGUCGCc -3'
miRNA:   3'- -GGGGCCa-----------GUGGGUgaGCUCGCAGCGc -5'
10906 3' -60.3 NC_002794.1 + 182379 0.75 0.342623
Target:  5'- cCCCCGGUCcCCCGCUC-AGCGgaaccaCGCc -3'
miRNA:   3'- -GGGGCCAGuGGGUGAGcUCGCa-----GCGc -5'
10906 3' -60.3 NC_002794.1 + 128561 0.74 0.387708
Target:  5'- -gCUGGUCAUCgCGCUCG-GCGUCGUGu -3'
miRNA:   3'- ggGGCCAGUGG-GUGAGCuCGCAGCGC- -5'
10906 3' -60.3 NC_002794.1 + 179106 0.73 0.453564
Target:  5'- gUCCGGUCGUCCGCggucCGGGCG-CGCGg -3'
miRNA:   3'- gGGGCCAGUGGGUGa---GCUCGCaGCGC- -5'
10906 3' -60.3 NC_002794.1 + 123994 0.72 0.497671
Target:  5'- gCgCCGGUCAUCUACgugaagCGGGCGgcCGCGg -3'
miRNA:   3'- -GgGGCCAGUGGGUGa-----GCUCGCa-GCGC- -5'
10906 3' -60.3 NC_002794.1 + 77923 0.72 0.514935
Target:  5'- aCCCGGUCcgccgaaACCCGC-CGgaGGCGcCGCGa -3'
miRNA:   3'- gGGGCCAG-------UGGGUGaGC--UCGCaGCGC- -5'
10906 3' -60.3 NC_002794.1 + 251 0.72 0.515851
Target:  5'- aCCCCGGaCugCCGC-CGcGCG-CGCGg -3'
miRNA:   3'- -GGGGCCaGugGGUGaGCuCGCaGCGC- -5'
10906 3' -60.3 NC_002794.1 + 138517 0.72 0.515851
Target:  5'- gUCCCGGUCGCuUCGCUCGuuCGcUCGCu -3'
miRNA:   3'- -GGGGCCAGUG-GGUGAGCucGC-AGCGc -5'
10906 3' -60.3 NC_002794.1 + 52396 0.71 0.525041
Target:  5'- aCCCGGUCgacuACCUGCUCGAGCa--GCu -3'
miRNA:   3'- gGGGCCAG----UGGGUGAGCUCGcagCGc -5'
10906 3' -60.3 NC_002794.1 + 45946 0.71 0.534292
Target:  5'- gCCCGGUgACCgucuCUCGGGCG-CGUGa -3'
miRNA:   3'- gGGGCCAgUGGgu--GAGCUCGCaGCGC- -5'
10906 3' -60.3 NC_002794.1 + 19481 0.71 0.552961
Target:  5'- cCCgCCGGUCGCCCGCaccgaCGAcgGCGgaggUCGCGc -3'
miRNA:   3'- -GG-GGCCAGUGGGUGa----GCU--CGC----AGCGC- -5'
10906 3' -60.3 NC_002794.1 + 185308 0.71 0.56237
Target:  5'- aCCCGGUCGCCC-C---AGUGUCGCc -3'
miRNA:   3'- gGGGCCAGUGGGuGagcUCGCAGCGc -5'
10906 3' -60.3 NC_002794.1 + 46190 0.71 0.56237
Target:  5'- aCCCCGG-CACCgCGCUCGcuCGcCGCc -3'
miRNA:   3'- -GGGGCCaGUGG-GUGAGCucGCaGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.