miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10906 3' -60.3 NC_002794.1 + 2451 0.7 0.589876
Target:  5'- cCCCCGGUCccCCCACcaccaccUCaAGCG-CGCGa -3'
miRNA:   3'- -GGGGCCAGu-GGGUG-------AGcUCGCaGCGC- -5'
10906 3' -60.3 NC_002794.1 + 26615 0.7 0.59083
Target:  5'- cCCCCGcGUCcCCCAC-CGuccGCGUcCGCGc -3'
miRNA:   3'- -GGGGC-CAGuGGGUGaGCu--CGCA-GCGC- -5'
10906 3' -60.3 NC_002794.1 + 21690 0.7 0.59751
Target:  5'- gCUCCGGcUC-CCCGcCUCGGcguccacgggcgcuGCGUCGCGa -3'
miRNA:   3'- -GGGGCC-AGuGGGU-GAGCU--------------CGCAGCGC- -5'
10906 3' -60.3 NC_002794.1 + 118793 0.7 0.600377
Target:  5'- gCUCCGcagcGUCGCCCGCUUGGGC-UUGCu -3'
miRNA:   3'- -GGGGC----CAGUGGGUGAGCUCGcAGCGc -5'
10906 3' -60.3 NC_002794.1 + 71863 0.7 0.600377
Target:  5'- aCCgCCGGcCAgacUCCGCUCGA-CGUCGUGg -3'
miRNA:   3'- -GG-GGCCaGU---GGGUGAGCUcGCAGCGC- -5'
10906 3' -60.3 NC_002794.1 + 70053 0.7 0.609945
Target:  5'- ---aGGUCGCCCGgUCGGGCGgcCGCa -3'
miRNA:   3'- ggggCCAGUGGGUgAGCUCGCa-GCGc -5'
10906 3' -60.3 NC_002794.1 + 105699 0.7 0.609945
Target:  5'- aCCgCC-GUCGCCUccGCUCGAgGCGaUCGCGg -3'
miRNA:   3'- -GG-GGcCAGUGGG--UGAGCU-CGC-AGCGC- -5'
10906 3' -60.3 NC_002794.1 + 37866 0.7 0.609945
Target:  5'- uCUCCGGUCGgCguCUCGGGCGgCGgGg -3'
miRNA:   3'- -GGGGCCAGUgGguGAGCUCGCaGCgC- -5'
10906 3' -60.3 NC_002794.1 + 30548 0.7 0.629118
Target:  5'- cCCUCGGauggauccgCGCCCGCUCGuuCGUCaGCGu -3'
miRNA:   3'- -GGGGCCa--------GUGGGUGAGCucGCAG-CGC- -5'
10906 3' -60.3 NC_002794.1 + 57382 0.69 0.638711
Target:  5'- aCCCCGccaccuacGUCACCgGCUCcGGCGccCGCGu -3'
miRNA:   3'- -GGGGC--------CAGUGGgUGAGcUCGCa-GCGC- -5'
10906 3' -60.3 NC_002794.1 + 71393 0.69 0.638711
Target:  5'- cUCCaCGGUCugCgGCUCGGGCcggccGUCGUc -3'
miRNA:   3'- -GGG-GCCAGugGgUGAGCUCG-----CAGCGc -5'
10906 3' -60.3 NC_002794.1 + 115596 0.69 0.638711
Target:  5'- gCUgCGGUCgACCCGCUCGcccGGCGcCGgGa -3'
miRNA:   3'- -GGgGCCAG-UGGGUGAGC---UCGCaGCgC- -5'
10906 3' -60.3 NC_002794.1 + 17604 0.69 0.638711
Target:  5'- gCCUCGGUC-CCCAcCUCGAucccCGcCGCGg -3'
miRNA:   3'- -GGGGCCAGuGGGU-GAGCUc---GCaGCGC- -5'
10906 3' -60.3 NC_002794.1 + 191194 0.69 0.648299
Target:  5'- gCCCGGccgccCGCCCGCUCGcuCGcUCGCu -3'
miRNA:   3'- gGGGCCa----GUGGGUGAGCucGC-AGCGc -5'
10906 3' -60.3 NC_002794.1 + 131325 0.69 0.657876
Target:  5'- cCCUgGGUgGCCgGCUCGccCGUCGUGa -3'
miRNA:   3'- -GGGgCCAgUGGgUGAGCucGCAGCGC- -5'
10906 3' -60.3 NC_002794.1 + 185335 0.69 0.657876
Target:  5'- aCCCGcGUCGaCCGCUCGcGCGcCGCc -3'
miRNA:   3'- gGGGC-CAGUgGGUGAGCuCGCaGCGc -5'
10906 3' -60.3 NC_002794.1 + 187786 0.69 0.657876
Target:  5'- aCCCCGGaggaacgGCCCGCgaagCGAGCGa-GCGa -3'
miRNA:   3'- -GGGGCCag-----UGGGUGa---GCUCGCagCGC- -5'
10906 3' -60.3 NC_002794.1 + 36235 0.69 0.676016
Target:  5'- gCCCGGUCgauauagGCCCcguAgUCGAugGCGUCGUGu -3'
miRNA:   3'- gGGGCCAG-------UGGG---UgAGCU--CGCAGCGC- -5'
10906 3' -60.3 NC_002794.1 + 66953 0.69 0.676968
Target:  5'- cCCUCGaggccggcgaGUCGCUCGCcggggGAGCGUCGCGa -3'
miRNA:   3'- -GGGGC----------CAGUGGGUGag---CUCGCAGCGC- -5'
10906 3' -60.3 NC_002794.1 + 108866 0.69 0.676968
Target:  5'- gCgCGGUCACCggguccaACUCG-GCGUgCGCGg -3'
miRNA:   3'- gGgGCCAGUGGg------UGAGCuCGCA-GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.