Results 81 - 98 of 98 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10906 | 3' | -60.3 | NC_002794.1 | + | 137088 | 0.66 | 0.82802 |
Target: 5'- gCCauGUCGCCCGCUCGcGCuccuucCGCGa -3' miRNA: 3'- gGGgcCAGUGGGUGAGCuCGca----GCGC- -5' |
|||||||
10906 | 3' | -60.3 | NC_002794.1 | + | 56535 | 0.66 | 0.82802 |
Target: 5'- uUCCGGUCGCCa--UCcgGAGCGcUCGCc -3' miRNA: 3'- gGGGCCAGUGGgugAG--CUCGC-AGCGc -5' |
|||||||
10906 | 3' | -60.3 | NC_002794.1 | + | 86914 | 0.66 | 0.831166 |
Target: 5'- aCCCGGUgaCGCCCguggcgggcagGCggggcgggauccggCGAGCGUCGaCGu -3' miRNA: 3'- gGGGCCA--GUGGG-----------UGa-------------GCUCGCAGC-GC- -5' |
|||||||
10906 | 3' | -60.3 | NC_002794.1 | + | 111573 | 0.66 | 0.835836 |
Target: 5'- gCgCGGUCACUacgguggccaGCUCGAGCGggGUGa -3' miRNA: 3'- gGgGCCAGUGGg---------UGAGCUCGCagCGC- -5' |
|||||||
10906 | 3' | -60.3 | NC_002794.1 | + | 187444 | 0.66 | 0.835836 |
Target: 5'- gCCgCGccGUCugCCgccGCUCG-GCGUCGCu -3' miRNA: 3'- -GGgGC--CAGugGG---UGAGCuCGCAGCGc -5' |
|||||||
10906 | 3' | -60.3 | NC_002794.1 | + | 8188 | 0.66 | 0.835836 |
Target: 5'- gCCCGGUUuCCCACcCGGGCaaacaacUGCGg -3' miRNA: 3'- gGGGCCAGuGGGUGaGCUCGca-----GCGC- -5' |
|||||||
10906 | 3' | -60.3 | NC_002794.1 | + | 70631 | 0.66 | 0.835836 |
Target: 5'- gCCCCGGUCGCaCCGCcaccagguucUUGGccuCGUgCGCGg -3' miRNA: 3'- -GGGGCCAGUG-GGUG----------AGCUc--GCA-GCGC- -5' |
|||||||
10906 | 3' | -60.3 | NC_002794.1 | + | 68861 | 0.66 | 0.838917 |
Target: 5'- aCCCCGGagcucgggcUCGccggccucgcccguuCCCACggcuacCGAucGCGUCGCGg -3' miRNA: 3'- -GGGGCC---------AGU---------------GGGUGa-----GCU--CGCAGCGC- -5' |
|||||||
10906 | 3' | -60.3 | NC_002794.1 | + | 126113 | 0.66 | 0.843488 |
Target: 5'- gCCCUGGgCGCCgCGCUCGucuGCGcCGg- -3' miRNA: 3'- -GGGGCCaGUGG-GUGAGCu--CGCaGCgc -5' |
|||||||
10906 | 3' | -60.3 | NC_002794.1 | + | 69835 | 0.66 | 0.843488 |
Target: 5'- gCCCGGUcCGCUgGCUCaccGCcUCGCGa -3' miRNA: 3'- gGGGCCA-GUGGgUGAGcu-CGcAGCGC- -5' |
|||||||
10906 | 3' | -60.3 | NC_002794.1 | + | 110242 | 0.66 | 0.843488 |
Target: 5'- cCUCCgcggcggaGGUUuCCCGCgCG-GCGUCGCGa -3' miRNA: 3'- -GGGG--------CCAGuGGGUGaGCuCGCAGCGC- -5' |
|||||||
10906 | 3' | -60.3 | NC_002794.1 | + | 13130 | 0.66 | 0.843488 |
Target: 5'- gCgCGGcUCGCUCGCgCGGGuCGUCGCc -3' miRNA: 3'- gGgGCC-AGUGGGUGaGCUC-GCAGCGc -5' |
|||||||
10906 | 3' | -60.3 | NC_002794.1 | + | 37950 | 0.66 | 0.843488 |
Target: 5'- gCCUCGGcgACUCGCUCG-GCGgcUCGUGg -3' miRNA: 3'- -GGGGCCagUGGGUGAGCuCGC--AGCGC- -5' |
|||||||
10906 | 3' | -60.3 | NC_002794.1 | + | 106238 | 0.66 | 0.843488 |
Target: 5'- gCUCgGGUCGCagaccgCCGCgaaccggCGAGCGcCGCGc -3' miRNA: 3'- -GGGgCCAGUG------GGUGa------GCUCGCaGCGC- -5' |
|||||||
10906 | 3' | -60.3 | NC_002794.1 | + | 147254 | 0.66 | 0.850972 |
Target: 5'- aCUCCGGgCAgaCGCUCGAGCuGcCGUGg -3' miRNA: 3'- -GGGGCCaGUggGUGAGCUCG-CaGCGC- -5' |
|||||||
10906 | 3' | -60.3 | NC_002794.1 | + | 50786 | 0.66 | 0.850972 |
Target: 5'- gUCUCGGgcggCGCCUcCUCGcccGGCGUCGgGc -3' miRNA: 3'- -GGGGCCa---GUGGGuGAGC---UCGCAGCgC- -5' |
|||||||
10906 | 3' | -60.3 | NC_002794.1 | + | 151690 | 0.66 | 0.850972 |
Target: 5'- aCUUgGGUCGCCCcgccgGC-CGAGCGcgccagUCGCGc -3' miRNA: 3'- -GGGgCCAGUGGG-----UGaGCUCGC------AGCGC- -5' |
|||||||
10906 | 3' | -60.3 | NC_002794.1 | + | 182077 | 0.66 | 0.850972 |
Target: 5'- gUCCGGUCGgCCAC-CGccagccAGCGuucuUCGCGg -3' miRNA: 3'- gGGGCCAGUgGGUGaGC------UCGC----AGCGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home