miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10906 3' -60.3 NC_002794.1 + 132296 0.66 0.82802
Target:  5'- aCUCGGUCACCgUAUUCcacAGCGUgGUGa -3'
miRNA:   3'- gGGGCCAGUGG-GUGAGc--UCGCAgCGC- -5'
10906 3' -60.3 NC_002794.1 + 191807 0.66 0.82802
Target:  5'- gCCCGcUCGgCCGCUCGAGgacCGCGa -3'
miRNA:   3'- gGGGCcAGUgGGUGAGCUCgcaGCGC- -5'
10906 3' -60.3 NC_002794.1 + 66209 0.66 0.825645
Target:  5'- uCCCCGGgaaagcUCACCUccucuccuucuucgGC-CGGGCGcUUGCGg -3'
miRNA:   3'- -GGGGCC------AGUGGG--------------UGaGCUCGC-AGCGC- -5'
10906 3' -60.3 NC_002794.1 + 182679 0.66 0.820048
Target:  5'- aCCCGGUC-CCCG---GAGCGcuUCGCu -3'
miRNA:   3'- gGGGCCAGuGGGUgagCUCGC--AGCGc -5'
10906 3' -60.3 NC_002794.1 + 75621 0.66 0.820048
Target:  5'- aUCCCGGUCugguACCCuuuCUCGcuacacacgAGCGgcaGCGg -3'
miRNA:   3'- -GGGGCCAG----UGGGu--GAGC---------UCGCag-CGC- -5'
10906 3' -60.3 NC_002794.1 + 124318 0.66 0.818436
Target:  5'- gCCCGGUCgaucgacccgcgACCCACgucCGAGCucucucucucucUCGCGu -3'
miRNA:   3'- gGGGCCAG------------UGGGUGa--GCUCGc-----------AGCGC- -5'
10906 3' -60.3 NC_002794.1 + 53241 0.66 0.811926
Target:  5'- uCCUCGGccCGCCgCGC-CG-GCGUCGCc -3'
miRNA:   3'- -GGGGCCa-GUGG-GUGaGCuCGCAGCGc -5'
10906 3' -60.3 NC_002794.1 + 46262 0.66 0.811926
Target:  5'- uCCUCGGgccgUCGacCCCACUcCGAGCGUUcCGa -3'
miRNA:   3'- -GGGGCC----AGU--GGGUGA-GCUCGCAGcGC- -5'
10906 3' -60.3 NC_002794.1 + 14254 0.66 0.806984
Target:  5'- aCCgCCGGcUCgACCCcgaccgagguguucgGCUgGAGCGUCaGCGu -3'
miRNA:   3'- -GG-GGCC-AG-UGGG---------------UGAgCUCGCAG-CGC- -5'
10906 3' -60.3 NC_002794.1 + 81400 0.66 0.803661
Target:  5'- gCUCCGGUC-CCgGCUCGGGagcugcUCGCc -3'
miRNA:   3'- -GGGGCCAGuGGgUGAGCUCgc----AGCGc -5'
10906 3' -60.3 NC_002794.1 + 102628 0.66 0.803661
Target:  5'- aCCUggCGGUCAUCCGC-CGgcuGGCGgCGCGc -3'
miRNA:   3'- -GGG--GCCAGUGGGUGaGC---UCGCaGCGC- -5'
10906 3' -60.3 NC_002794.1 + 21441 0.66 0.803661
Target:  5'- aCgUCGGUCucGCgUCGCUCG-GCGUCGCc -3'
miRNA:   3'- -GgGGCCAG--UG-GGUGAGCuCGCAGCGc -5'
10906 3' -60.3 NC_002794.1 + 29750 0.66 0.803661
Target:  5'- -aCCGGgcgccgaGCCCGCgcCGAGCGUCuCGg -3'
miRNA:   3'- ggGGCCag-----UGGGUGa-GCUCGCAGcGC- -5'
10906 3' -60.3 NC_002794.1 + 59650 0.66 0.803661
Target:  5'- uCCCCGGUCGCCacggCGCUgcaGAGCcgccugCGCc -3'
miRNA:   3'- -GGGGCCAGUGG----GUGAg--CUCGca----GCGc -5'
10906 3' -60.3 NC_002794.1 + 133747 0.67 0.795259
Target:  5'- gUUCGGUCGCCUgcagggucccgACUCGAcCGcUCGCGa -3'
miRNA:   3'- gGGGCCAGUGGG-----------UGAGCUcGC-AGCGC- -5'
10906 3' -60.3 NC_002794.1 + 151027 0.67 0.792713
Target:  5'- gCCCgUGGUCGCCCGuCUgaugacgggCGAGUgcacggccgcgcagGUCGCGg -3'
miRNA:   3'- -GGG-GCCAGUGGGU-GA---------GCUCG--------------CAGCGC- -5'
10906 3' -60.3 NC_002794.1 + 42927 0.67 0.786728
Target:  5'- gUCCgGGUCAcgauCCCGCUCGccaUGUCGCc -3'
miRNA:   3'- -GGGgCCAGU----GGGUGAGCuc-GCAGCGc -5'
10906 3' -60.3 NC_002794.1 + 187916 0.67 0.786728
Target:  5'- cCCgCCGGgC-CCCGCcgCGAcCGUCGCGu -3'
miRNA:   3'- -GG-GGCCaGuGGGUGa-GCUcGCAGCGC- -5'
10906 3' -60.3 NC_002794.1 + 185562 0.67 0.778075
Target:  5'- gCCCCGccCugCCGCggcaGGGCG-CGCGg -3'
miRNA:   3'- -GGGGCcaGugGGUGag--CUCGCaGCGC- -5'
10906 3' -60.3 NC_002794.1 + 85022 0.67 0.778075
Target:  5'- gCCCCGG--GCCCacGCUCGGGUGccUCGgGc -3'
miRNA:   3'- -GGGGCCagUGGG--UGAGCUCGC--AGCgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.