miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10906 3' -60.3 NC_002794.1 + 109518 0.67 0.778075
Target:  5'- gCCCGG-C-CCgCGCUCGuucGGCGUCGgGc -3'
miRNA:   3'- gGGGCCaGuGG-GUGAGC---UCGCAGCgC- -5'
10906 3' -60.3 NC_002794.1 + 56827 0.67 0.778075
Target:  5'- gCCCUGGcCGCCCACacCGuGCGcuUCGaCGa -3'
miRNA:   3'- -GGGGCCaGUGGGUGa-GCuCGC--AGC-GC- -5'
10906 3' -60.3 NC_002794.1 + 193769 0.67 0.769306
Target:  5'- gCCCCGcucgcUCGCCCGCUCGA---UCGCc -3'
miRNA:   3'- -GGGGCc----AGUGGGUGAGCUcgcAGCGc -5'
10906 3' -60.3 NC_002794.1 + 8714 0.67 0.763993
Target:  5'- gCCCCGGguccaCACCCcccagaccguggagcGCgugucUCGGGCGugUCGCGa -3'
miRNA:   3'- -GGGGCCa----GUGGG---------------UG-----AGCUCGC--AGCGC- -5'
10906 3' -60.3 NC_002794.1 + 58089 0.67 0.760431
Target:  5'- gCCCGG-CGCCCgcGCUCGAcCGcUGCGu -3'
miRNA:   3'- gGGGCCaGUGGG--UGAGCUcGCaGCGC- -5'
10906 3' -60.3 NC_002794.1 + 130509 0.67 0.760431
Target:  5'- gCgCC--UCGCCCACUCGAGCGggcugacCGUGa -3'
miRNA:   3'- -GgGGccAGUGGGUGAGCUCGCa------GCGC- -5'
10906 3' -60.3 NC_002794.1 + 143276 0.68 0.742388
Target:  5'- gCCCGG-CGCCgGCcgcucggggUCGGGCGggugcagCGCGg -3'
miRNA:   3'- gGGGCCaGUGGgUG---------AGCUCGCa------GCGC- -5'
10906 3' -60.3 NC_002794.1 + 143719 0.68 0.733235
Target:  5'- gCCCCGGcgggcgucguccUCGCCCGC-CGGacGCGcCGCc -3'
miRNA:   3'- -GGGGCC------------AGUGGGUGaGCU--CGCaGCGc -5'
10906 3' -60.3 NC_002794.1 + 107212 0.68 0.733235
Target:  5'- gCCCGG-CG-CCGC-CGGGCGgcgCGCGa -3'
miRNA:   3'- gGGGCCaGUgGGUGaGCUCGCa--GCGC- -5'
10906 3' -60.3 NC_002794.1 + 35550 0.68 0.733235
Target:  5'- aCCCGG-CGCUCGCgcgCGcGCGUgGUGg -3'
miRNA:   3'- gGGGCCaGUGGGUGa--GCuCGCAgCGC- -5'
10906 3' -60.3 NC_002794.1 + 111629 0.68 0.724006
Target:  5'- gCCgCGGcCGCcgCCGgUCGGGCGcCGCGg -3'
miRNA:   3'- -GGgGCCaGUG--GGUgAGCUCGCaGCGC- -5'
10906 3' -60.3 NC_002794.1 + 90964 0.68 0.724006
Target:  5'- gCCCGG--GCCCGCUUcGGCGUgGCc -3'
miRNA:   3'- gGGGCCagUGGGUGAGcUCGCAgCGc -5'
10906 3' -60.3 NC_002794.1 + 152144 0.68 0.724006
Target:  5'- -gCCGGUUcaACCCGCUCcAGCGcCuGCGg -3'
miRNA:   3'- ggGGCCAG--UGGGUGAGcUCGCaG-CGC- -5'
10906 3' -60.3 NC_002794.1 + 11711 0.68 0.705347
Target:  5'- gCUCGGUCGgCCACUUGcAGCuGUgGCa -3'
miRNA:   3'- gGGGCCAGUgGGUGAGC-UCG-CAgCGc -5'
10906 3' -60.3 NC_002794.1 + 42211 0.68 0.705347
Target:  5'- gCCgCCGGUCugCCGCUgGAucaGcCGCGa -3'
miRNA:   3'- -GG-GGCCAGugGGUGAgCUcg-CaGCGC- -5'
10906 3' -60.3 NC_002794.1 + 185929 0.68 0.695932
Target:  5'- aCCgCCGGcCACCCGC-CaGGC-UCGCGg -3'
miRNA:   3'- -GG-GGCCaGUGGGUGaGcUCGcAGCGC- -5'
10906 3' -60.3 NC_002794.1 + 193059 0.68 0.695932
Target:  5'- gCCCG--CACCgGCUgCGGGcCGUCGCGg -3'
miRNA:   3'- gGGGCcaGUGGgUGA-GCUC-GCAGCGC- -5'
10906 3' -60.3 NC_002794.1 + 184493 0.69 0.68647
Target:  5'- gCCCCGGaCGCCCggGCggcgCGGGCccCGCGc -3'
miRNA:   3'- -GGGGCCaGUGGG--UGa---GCUCGcaGCGC- -5'
10906 3' -60.3 NC_002794.1 + 108866 0.69 0.676968
Target:  5'- gCgCGGUCACCggguccaACUCG-GCGUgCGCGg -3'
miRNA:   3'- gGgGCCAGUGGg------UGAGCuCGCA-GCGC- -5'
10906 3' -60.3 NC_002794.1 + 66953 0.69 0.676968
Target:  5'- cCCUCGaggccggcgaGUCGCUCGCcggggGAGCGUCGCGa -3'
miRNA:   3'- -GGGGC----------CAGUGGGUGag---CUCGCAGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.