miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10906 3' -60.3 NC_002794.1 + 251 0.72 0.515851
Target:  5'- aCCCCGGaCugCCGC-CGcGCG-CGCGg -3'
miRNA:   3'- -GGGGCCaGugGGUGaGCuCGCaGCGC- -5'
10906 3' -60.3 NC_002794.1 + 2451 0.7 0.589876
Target:  5'- cCCCCGGUCccCCCACcaccaccUCaAGCG-CGCGa -3'
miRNA:   3'- -GGGGCCAGu-GGGUG-------AGcUCGCaGCGC- -5'
10906 3' -60.3 NC_002794.1 + 7569 1.1 0.001801
Target:  5'- aCCCCGGUCACCCACUCGAGCGUCGCGu -3'
miRNA:   3'- -GGGGCCAGUGGGUGAGCUCGCAGCGC- -5'
10906 3' -60.3 NC_002794.1 + 8188 0.66 0.835836
Target:  5'- gCCCGGUUuCCCACcCGGGCaaacaacUGCGg -3'
miRNA:   3'- gGGGCCAGuGGGUGaGCUCGca-----GCGC- -5'
10906 3' -60.3 NC_002794.1 + 8714 0.67 0.763993
Target:  5'- gCCCCGGguccaCACCCcccagaccguggagcGCgugucUCGGGCGugUCGCGa -3'
miRNA:   3'- -GGGGCCa----GUGGG---------------UG-----AGCUCGC--AGCGC- -5'
10906 3' -60.3 NC_002794.1 + 11711 0.68 0.705347
Target:  5'- gCUCGGUCGgCCACUUGcAGCuGUgGCa -3'
miRNA:   3'- gGGGCCAGUgGGUGAGC-UCG-CAgCGc -5'
10906 3' -60.3 NC_002794.1 + 13130 0.66 0.843488
Target:  5'- gCgCGGcUCGCUCGCgCGGGuCGUCGCc -3'
miRNA:   3'- gGgGCC-AGUGGGUGaGCUC-GCAGCGc -5'
10906 3' -60.3 NC_002794.1 + 14254 0.66 0.806984
Target:  5'- aCCgCCGGcUCgACCCcgaccgagguguucgGCUgGAGCGUCaGCGu -3'
miRNA:   3'- -GG-GGCC-AG-UGGG---------------UGAgCUCGCAG-CGC- -5'
10906 3' -60.3 NC_002794.1 + 17604 0.69 0.638711
Target:  5'- gCCUCGGUC-CCCAcCUCGAucccCGcCGCGg -3'
miRNA:   3'- -GGGGCCAGuGGGU-GAGCUc---GCaGCGC- -5'
10906 3' -60.3 NC_002794.1 + 19481 0.71 0.552961
Target:  5'- cCCgCCGGUCGCCCGCaccgaCGAcgGCGgaggUCGCGc -3'
miRNA:   3'- -GG-GGCCAGUGGGUGa----GCU--CGC----AGCGC- -5'
10906 3' -60.3 NC_002794.1 + 21441 0.66 0.803661
Target:  5'- aCgUCGGUCucGCgUCGCUCG-GCGUCGCc -3'
miRNA:   3'- -GgGGCCAG--UG-GGUGAGCuCGCAGCGc -5'
10906 3' -60.3 NC_002794.1 + 21690 0.7 0.59751
Target:  5'- gCUCCGGcUC-CCCGcCUCGGcguccacgggcgcuGCGUCGCGa -3'
miRNA:   3'- -GGGGCC-AGuGGGU-GAGCU--------------CGCAGCGC- -5'
10906 3' -60.3 NC_002794.1 + 22373 0.82 0.137412
Target:  5'- aCCCCGGUCccgAUCCGgUCGGGCGUCGUc -3'
miRNA:   3'- -GGGGCCAG---UGGGUgAGCUCGCAGCGc -5'
10906 3' -60.3 NC_002794.1 + 24062 0.75 0.327066
Target:  5'- gCCCCGGaccacacccgugCGCCCGggCGGGCGUCGCc -3'
miRNA:   3'- -GGGGCCa-----------GUGGGUgaGCUCGCAGCGc -5'
10906 3' -60.3 NC_002794.1 + 26615 0.7 0.59083
Target:  5'- cCCCCGcGUCcCCCAC-CGuccGCGUcCGCGc -3'
miRNA:   3'- -GGGGC-CAGuGGGUGaGCu--CGCA-GCGC- -5'
10906 3' -60.3 NC_002794.1 + 29750 0.66 0.803661
Target:  5'- -aCCGGgcgccgaGCCCGCgcCGAGCGUCuCGg -3'
miRNA:   3'- ggGGCCag-----UGGGUGa-GCUCGCAGcGC- -5'
10906 3' -60.3 NC_002794.1 + 30072 0.77 0.258355
Target:  5'- gUCCGGUCGCCCGgUCGAcgagGCG-CGCGg -3'
miRNA:   3'- gGGGCCAGUGGGUgAGCU----CGCaGCGC- -5'
10906 3' -60.3 NC_002794.1 + 30548 0.7 0.629118
Target:  5'- cCCUCGGauggauccgCGCCCGCUCGuuCGUCaGCGu -3'
miRNA:   3'- -GGGGCCa--------GUGGGUGAGCucGCAG-CGC- -5'
10906 3' -60.3 NC_002794.1 + 35550 0.68 0.733235
Target:  5'- aCCCGG-CGCUCGCgcgCGcGCGUgGUGg -3'
miRNA:   3'- gGGGCCaGUGGGUGa--GCuCGCAgCGC- -5'
10906 3' -60.3 NC_002794.1 + 36235 0.69 0.676016
Target:  5'- gCCCGGUCgauauagGCCCcguAgUCGAugGCGUCGUGu -3'
miRNA:   3'- gGGGCCAG-------UGGG---UgAGCU--CGCAGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.