miRNA display CGI


Results 41 - 60 of 98 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10906 3' -60.3 NC_002794.1 + 69835 0.66 0.843488
Target:  5'- gCCCGGUcCGCUgGCUCaccGCcUCGCGa -3'
miRNA:   3'- gGGGCCA-GUGGgUGAGcu-CGcAGCGC- -5'
10906 3' -60.3 NC_002794.1 + 70053 0.7 0.609945
Target:  5'- ---aGGUCGCCCGgUCGGGCGgcCGCa -3'
miRNA:   3'- ggggCCAGUGGGUgAGCUCGCa-GCGc -5'
10906 3' -60.3 NC_002794.1 + 70631 0.66 0.835836
Target:  5'- gCCCCGGUCGCaCCGCcaccagguucUUGGccuCGUgCGCGg -3'
miRNA:   3'- -GGGGCCAGUG-GGUG----------AGCUc--GCA-GCGC- -5'
10906 3' -60.3 NC_002794.1 + 71393 0.69 0.638711
Target:  5'- cUCCaCGGUCugCgGCUCGGGCcggccGUCGUc -3'
miRNA:   3'- -GGG-GCCAGugGgUGAGCUCG-----CAGCGc -5'
10906 3' -60.3 NC_002794.1 + 71863 0.7 0.600377
Target:  5'- aCCgCCGGcCAgacUCCGCUCGA-CGUCGUGg -3'
miRNA:   3'- -GG-GGCCaGU---GGGUGAGCUcGCAGCGC- -5'
10906 3' -60.3 NC_002794.1 + 75621 0.66 0.820048
Target:  5'- aUCCCGGUCugguACCCuuuCUCGcuacacacgAGCGgcaGCGg -3'
miRNA:   3'- -GGGGCCAG----UGGGu--GAGC---------UCGCag-CGC- -5'
10906 3' -60.3 NC_002794.1 + 77923 0.72 0.514935
Target:  5'- aCCCGGUCcgccgaaACCCGC-CGgaGGCGcCGCGa -3'
miRNA:   3'- gGGGCCAG-------UGGGUGaGC--UCGCaGCGC- -5'
10906 3' -60.3 NC_002794.1 + 81400 0.66 0.803661
Target:  5'- gCUCCGGUC-CCgGCUCGGGagcugcUCGCc -3'
miRNA:   3'- -GGGGCCAGuGGgUGAGCUCgc----AGCGc -5'
10906 3' -60.3 NC_002794.1 + 85022 0.67 0.778075
Target:  5'- gCCCCGG--GCCCacGCUCGGGUGccUCGgGc -3'
miRNA:   3'- -GGGGCCagUGGG--UGAGCUCGC--AGCgC- -5'
10906 3' -60.3 NC_002794.1 + 86914 0.66 0.831166
Target:  5'- aCCCGGUgaCGCCCguggcgggcagGCggggcgggauccggCGAGCGUCGaCGu -3'
miRNA:   3'- gGGGCCA--GUGGG-----------UGa-------------GCUCGCAGC-GC- -5'
10906 3' -60.3 NC_002794.1 + 90964 0.68 0.724006
Target:  5'- gCCCGG--GCCCGCUUcGGCGUgGCc -3'
miRNA:   3'- gGGGCCagUGGGUGAGcUCGCAgCGc -5'
10906 3' -60.3 NC_002794.1 + 102628 0.66 0.803661
Target:  5'- aCCUggCGGUCAUCCGC-CGgcuGGCGgCGCGc -3'
miRNA:   3'- -GGG--GCCAGUGGGUGaGC---UCGCaGCGC- -5'
10906 3' -60.3 NC_002794.1 + 105699 0.7 0.609945
Target:  5'- aCCgCC-GUCGCCUccGCUCGAgGCGaUCGCGg -3'
miRNA:   3'- -GG-GGcCAGUGGG--UGAGCU-CGC-AGCGC- -5'
10906 3' -60.3 NC_002794.1 + 106238 0.66 0.843488
Target:  5'- gCUCgGGUCGCagaccgCCGCgaaccggCGAGCGcCGCGc -3'
miRNA:   3'- -GGGgCCAGUG------GGUGa------GCUCGCaGCGC- -5'
10906 3' -60.3 NC_002794.1 + 107212 0.68 0.733235
Target:  5'- gCCCGG-CG-CCGC-CGGGCGgcgCGCGa -3'
miRNA:   3'- gGGGCCaGUgGGUGaGCUCGCa--GCGC- -5'
10906 3' -60.3 NC_002794.1 + 108866 0.69 0.676968
Target:  5'- gCgCGGUCACCggguccaACUCG-GCGUgCGCGg -3'
miRNA:   3'- gGgGCCAGUGGg------UGAGCuCGCA-GCGC- -5'
10906 3' -60.3 NC_002794.1 + 109518 0.67 0.778075
Target:  5'- gCCCGG-C-CCgCGCUCGuucGGCGUCGgGc -3'
miRNA:   3'- gGGGCCaGuGG-GUGAGC---UCGCAGCgC- -5'
10906 3' -60.3 NC_002794.1 + 110242 0.66 0.843488
Target:  5'- cCUCCgcggcggaGGUUuCCCGCgCG-GCGUCGCGa -3'
miRNA:   3'- -GGGG--------CCAGuGGGUGaGCuCGCAGCGC- -5'
10906 3' -60.3 NC_002794.1 + 111573 0.66 0.835836
Target:  5'- gCgCGGUCACUacgguggccaGCUCGAGCGggGUGa -3'
miRNA:   3'- gGgGCCAGUGGg---------UGAGCUCGCagCGC- -5'
10906 3' -60.3 NC_002794.1 + 111629 0.68 0.724006
Target:  5'- gCCgCGGcCGCcgCCGgUCGGGCGcCGCGg -3'
miRNA:   3'- -GGgGCCaGUG--GGUgAGCUCGCaGCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.