miRNA display CGI


Results 61 - 80 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10906 3' -60.3 NC_002794.1 + 113515 0.66 0.82802
Target:  5'- gCCgCGGagggagcucCGCCgGCUCG-GCGUCGCc -3'
miRNA:   3'- -GGgGCCa--------GUGGgUGAGCuCGCAGCGc -5'
10906 3' -60.3 NC_002794.1 + 115596 0.69 0.638711
Target:  5'- gCUgCGGUCgACCCGCUCGcccGGCGcCGgGa -3'
miRNA:   3'- -GGgGCCAG-UGGGUGAGC---UCGCaGCgC- -5'
10906 3' -60.3 NC_002794.1 + 118793 0.7 0.600377
Target:  5'- gCUCCGcagcGUCGCCCGCUUGGGC-UUGCu -3'
miRNA:   3'- -GGGGC----CAGUGGGUGAGCUCGcAGCGc -5'
10906 3' -60.3 NC_002794.1 + 119791 0.87 0.067038
Target:  5'- gCUCCGGUcCGCCgACUUGAGCGUCGCGu -3'
miRNA:   3'- -GGGGCCA-GUGGgUGAGCUCGCAGCGC- -5'
10906 3' -60.3 NC_002794.1 + 123994 0.72 0.497671
Target:  5'- gCgCCGGUCAUCUACgugaagCGGGCGgcCGCGg -3'
miRNA:   3'- -GgGGCCAGUGGGUGa-----GCUCGCa-GCGC- -5'
10906 3' -60.3 NC_002794.1 + 124318 0.66 0.818436
Target:  5'- gCCCGGUCgaucgacccgcgACCCACgucCGAGCucucucucucucUCGCGu -3'
miRNA:   3'- gGGGCCAG------------UGGGUGa--GCUCGc-----------AGCGC- -5'
10906 3' -60.3 NC_002794.1 + 126113 0.66 0.843488
Target:  5'- gCCCUGGgCGCCgCGCUCGucuGCGcCGg- -3'
miRNA:   3'- -GGGGCCaGUGG-GUGAGCu--CGCaGCgc -5'
10906 3' -60.3 NC_002794.1 + 128561 0.74 0.387708
Target:  5'- -gCUGGUCAUCgCGCUCG-GCGUCGUGu -3'
miRNA:   3'- ggGGCCAGUGG-GUGAGCuCGCAGCGC- -5'
10906 3' -60.3 NC_002794.1 + 130509 0.67 0.760431
Target:  5'- gCgCC--UCGCCCACUCGAGCGggcugacCGUGa -3'
miRNA:   3'- -GgGGccAGUGGGUGAGCUCGCa------GCGC- -5'
10906 3' -60.3 NC_002794.1 + 131325 0.69 0.657876
Target:  5'- cCCUgGGUgGCCgGCUCGccCGUCGUGa -3'
miRNA:   3'- -GGGgCCAgUGGgUGAGCucGCAGCGC- -5'
10906 3' -60.3 NC_002794.1 + 132296 0.66 0.82802
Target:  5'- aCUCGGUCACCgUAUUCcacAGCGUgGUGa -3'
miRNA:   3'- gGGGCCAGUGG-GUGAGc--UCGCAgCGC- -5'
10906 3' -60.3 NC_002794.1 + 133747 0.67 0.795259
Target:  5'- gUUCGGUCGCCUgcagggucccgACUCGAcCGcUCGCGa -3'
miRNA:   3'- gGGGCCAGUGGG-----------UGAGCUcGC-AGCGC- -5'
10906 3' -60.3 NC_002794.1 + 137088 0.66 0.82802
Target:  5'- gCCauGUCGCCCGCUCGcGCuccuucCGCGa -3'
miRNA:   3'- gGGgcCAGUGGGUGAGCuCGca----GCGC- -5'
10906 3' -60.3 NC_002794.1 + 138517 0.72 0.515851
Target:  5'- gUCCCGGUCGCuUCGCUCGuuCGcUCGCu -3'
miRNA:   3'- -GGGGCCAGUG-GGUGAGCucGC-AGCGc -5'
10906 3' -60.3 NC_002794.1 + 141594 0.66 0.82802
Target:  5'- gCCCGcGUCGCCgggcgGCUCG-GCGaccggcUCGCGg -3'
miRNA:   3'- gGGGC-CAGUGGg----UGAGCuCGC------AGCGC- -5'
10906 3' -60.3 NC_002794.1 + 143276 0.68 0.742388
Target:  5'- gCCCGG-CGCCgGCcgcucggggUCGGGCGggugcagCGCGg -3'
miRNA:   3'- gGGGCCaGUGGgUG---------AGCUCGCa------GCGC- -5'
10906 3' -60.3 NC_002794.1 + 143719 0.68 0.733235
Target:  5'- gCCCCGGcgggcgucguccUCGCCCGC-CGGacGCGcCGCc -3'
miRNA:   3'- -GGGGCC------------AGUGGGUGaGCU--CGCaGCGc -5'
10906 3' -60.3 NC_002794.1 + 147254 0.66 0.850972
Target:  5'- aCUCCGGgCAgaCGCUCGAGCuGcCGUGg -3'
miRNA:   3'- -GGGGCCaGUggGUGAGCUCG-CaGCGC- -5'
10906 3' -60.3 NC_002794.1 + 151027 0.67 0.792713
Target:  5'- gCCCgUGGUCGCCCGuCUgaugacgggCGAGUgcacggccgcgcagGUCGCGg -3'
miRNA:   3'- -GGG-GCCAGUGGGU-GA---------GCUCG--------------CAGCGC- -5'
10906 3' -60.3 NC_002794.1 + 151690 0.66 0.850972
Target:  5'- aCUUgGGUCGCCCcgccgGC-CGAGCGcgccagUCGCGc -3'
miRNA:   3'- -GGGgCCAGUGGG-----UGaGCUCGC------AGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.