miRNA display CGI


Results 81 - 98 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10906 3' -60.3 NC_002794.1 + 152144 0.68 0.724006
Target:  5'- -gCCGGUUcaACCCGCUCcAGCGcCuGCGg -3'
miRNA:   3'- ggGGCCAG--UGGGUGAGcUCGCaG-CGC- -5'
10906 3' -60.3 NC_002794.1 + 179106 0.73 0.453564
Target:  5'- gUCCGGUCGUCCGCggucCGGGCG-CGCGg -3'
miRNA:   3'- gGGGCCAGUGGGUGa---GCUCGCaGCGC- -5'
10906 3' -60.3 NC_002794.1 + 182077 0.66 0.850972
Target:  5'- gUCCGGUCGgCCAC-CGccagccAGCGuucuUCGCGg -3'
miRNA:   3'- gGGGCCAGUgGGUGaGC------UCGC----AGCGC- -5'
10906 3' -60.3 NC_002794.1 + 182379 0.75 0.342623
Target:  5'- cCCCCGGUCcCCCGCUC-AGCGgaaccaCGCc -3'
miRNA:   3'- -GGGGCCAGuGGGUGAGcUCGCa-----GCGc -5'
10906 3' -60.3 NC_002794.1 + 182679 0.66 0.820048
Target:  5'- aCCCGGUC-CCCG---GAGCGcuUCGCu -3'
miRNA:   3'- gGGGCCAGuGGGUgagCUCGC--AGCGc -5'
10906 3' -60.3 NC_002794.1 + 184493 0.69 0.68647
Target:  5'- gCCCCGGaCGCCCggGCggcgCGGGCccCGCGc -3'
miRNA:   3'- -GGGGCCaGUGGG--UGa---GCUCGcaGCGC- -5'
10906 3' -60.3 NC_002794.1 + 185308 0.71 0.56237
Target:  5'- aCCCGGUCGCCC-C---AGUGUCGCc -3'
miRNA:   3'- gGGGCCAGUGGGuGagcUCGCAGCGc -5'
10906 3' -60.3 NC_002794.1 + 185335 0.69 0.657876
Target:  5'- aCCCGcGUCGaCCGCUCGcGCGcCGCc -3'
miRNA:   3'- gGGGC-CAGUgGGUGAGCuCGCaGCGc -5'
10906 3' -60.3 NC_002794.1 + 185562 0.67 0.778075
Target:  5'- gCCCCGccCugCCGCggcaGGGCG-CGCGg -3'
miRNA:   3'- -GGGGCcaGugGGUGag--CUCGCaGCGC- -5'
10906 3' -60.3 NC_002794.1 + 185929 0.68 0.695932
Target:  5'- aCCgCCGGcCACCCGC-CaGGC-UCGCGg -3'
miRNA:   3'- -GG-GGCCaGUGGGUGaGcUCGcAGCGC- -5'
10906 3' -60.3 NC_002794.1 + 187444 0.66 0.835836
Target:  5'- gCCgCGccGUCugCCgccGCUCG-GCGUCGCu -3'
miRNA:   3'- -GGgGC--CAGugGG---UGAGCuCGCAGCGc -5'
10906 3' -60.3 NC_002794.1 + 187786 0.69 0.657876
Target:  5'- aCCCCGGaggaacgGCCCGCgaagCGAGCGa-GCGa -3'
miRNA:   3'- -GGGGCCag-----UGGGUGa---GCUCGCagCGC- -5'
10906 3' -60.3 NC_002794.1 + 187916 0.67 0.786728
Target:  5'- cCCgCCGGgC-CCCGCcgCGAcCGUCGCGu -3'
miRNA:   3'- -GG-GGCCaGuGGGUGa-GCUcGCAGCGC- -5'
10906 3' -60.3 NC_002794.1 + 191194 0.69 0.648299
Target:  5'- gCCCGGccgccCGCCCGCUCGcuCGcUCGCu -3'
miRNA:   3'- gGGGCCa----GUGGGUGAGCucGC-AGCGc -5'
10906 3' -60.3 NC_002794.1 + 191807 0.66 0.82802
Target:  5'- gCCCGcUCGgCCGCUCGAGgacCGCGa -3'
miRNA:   3'- gGGGCcAGUgGGUGAGCUCgcaGCGC- -5'
10906 3' -60.3 NC_002794.1 + 193059 0.68 0.695932
Target:  5'- gCCCG--CACCgGCUgCGGGcCGUCGCGg -3'
miRNA:   3'- gGGGCcaGUGGgUGA-GCUC-GCAGCGC- -5'
10906 3' -60.3 NC_002794.1 + 193769 0.67 0.769306
Target:  5'- gCCCCGcucgcUCGCCCGCUCGA---UCGCc -3'
miRNA:   3'- -GGGGCc----AGUGGGUGAGCUcgcAGCGc -5'
10906 3' -60.3 NC_002794.1 + 193802 0.77 0.274957
Target:  5'- aCgCCGG-CGCCCGCUCGucuggcgccgacGCGUCGCGg -3'
miRNA:   3'- -GgGGCCaGUGGGUGAGCu-----------CGCAGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.