Results 21 - 40 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10906 | 3' | -60.3 | NC_002794.1 | + | 147254 | 0.66 | 0.850972 |
Target: 5'- aCUCCGGgCAgaCGCUCGAGCuGcCGUGg -3' miRNA: 3'- -GGGGCCaGUggGUGAGCUCG-CaGCGC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 143719 | 0.68 | 0.733235 |
Target: 5'- gCCCCGGcgggcgucguccUCGCCCGC-CGGacGCGcCGCc -3' miRNA: 3'- -GGGGCC------------AGUGGGUGaGCU--CGCaGCGc -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 143276 | 0.68 | 0.742388 |
Target: 5'- gCCCGG-CGCCgGCcgcucggggUCGGGCGggugcagCGCGg -3' miRNA: 3'- gGGGCCaGUGGgUG---------AGCUCGCa------GCGC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 141594 | 0.66 | 0.82802 |
Target: 5'- gCCCGcGUCGCCgggcgGCUCG-GCGaccggcUCGCGg -3' miRNA: 3'- gGGGC-CAGUGGg----UGAGCuCGC------AGCGC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 138517 | 0.72 | 0.515851 |
Target: 5'- gUCCCGGUCGCuUCGCUCGuuCGcUCGCu -3' miRNA: 3'- -GGGGCCAGUG-GGUGAGCucGC-AGCGc -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 137088 | 0.66 | 0.82802 |
Target: 5'- gCCauGUCGCCCGCUCGcGCuccuucCGCGa -3' miRNA: 3'- gGGgcCAGUGGGUGAGCuCGca----GCGC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 133747 | 0.67 | 0.795259 |
Target: 5'- gUUCGGUCGCCUgcagggucccgACUCGAcCGcUCGCGa -3' miRNA: 3'- gGGGCCAGUGGG-----------UGAGCUcGC-AGCGC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 132296 | 0.66 | 0.82802 |
Target: 5'- aCUCGGUCACCgUAUUCcacAGCGUgGUGa -3' miRNA: 3'- gGGGCCAGUGG-GUGAGc--UCGCAgCGC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 131325 | 0.69 | 0.657876 |
Target: 5'- cCCUgGGUgGCCgGCUCGccCGUCGUGa -3' miRNA: 3'- -GGGgCCAgUGGgUGAGCucGCAGCGC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 130509 | 0.67 | 0.760431 |
Target: 5'- gCgCC--UCGCCCACUCGAGCGggcugacCGUGa -3' miRNA: 3'- -GgGGccAGUGGGUGAGCUCGCa------GCGC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 128561 | 0.74 | 0.387708 |
Target: 5'- -gCUGGUCAUCgCGCUCG-GCGUCGUGu -3' miRNA: 3'- ggGGCCAGUGG-GUGAGCuCGCAGCGC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 126113 | 0.66 | 0.843488 |
Target: 5'- gCCCUGGgCGCCgCGCUCGucuGCGcCGg- -3' miRNA: 3'- -GGGGCCaGUGG-GUGAGCu--CGCaGCgc -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 124318 | 0.66 | 0.818436 |
Target: 5'- gCCCGGUCgaucgacccgcgACCCACgucCGAGCucucucucucucUCGCGu -3' miRNA: 3'- gGGGCCAG------------UGGGUGa--GCUCGc-----------AGCGC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 123994 | 0.72 | 0.497671 |
Target: 5'- gCgCCGGUCAUCUACgugaagCGGGCGgcCGCGg -3' miRNA: 3'- -GgGGCCAGUGGGUGa-----GCUCGCa-GCGC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 119791 | 0.87 | 0.067038 |
Target: 5'- gCUCCGGUcCGCCgACUUGAGCGUCGCGu -3' miRNA: 3'- -GGGGCCA-GUGGgUGAGCUCGCAGCGC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 118793 | 0.7 | 0.600377 |
Target: 5'- gCUCCGcagcGUCGCCCGCUUGGGC-UUGCu -3' miRNA: 3'- -GGGGC----CAGUGGGUGAGCUCGcAGCGc -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 115596 | 0.69 | 0.638711 |
Target: 5'- gCUgCGGUCgACCCGCUCGcccGGCGcCGgGa -3' miRNA: 3'- -GGgGCCAG-UGGGUGAGC---UCGCaGCgC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 113515 | 0.66 | 0.82802 |
Target: 5'- gCCgCGGagggagcucCGCCgGCUCG-GCGUCGCc -3' miRNA: 3'- -GGgGCCa--------GUGGgUGAGCuCGCAGCGc -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 111629 | 0.68 | 0.724006 |
Target: 5'- gCCgCGGcCGCcgCCGgUCGGGCGcCGCGg -3' miRNA: 3'- -GGgGCCaGUG--GGUgAGCUCGCaGCGC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 111573 | 0.66 | 0.835836 |
Target: 5'- gCgCGGUCACUacgguggccaGCUCGAGCGggGUGa -3' miRNA: 3'- gGgGCCAGUGGg---------UGAGCUCGCagCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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