miRNA display CGI


Results 61 - 80 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10906 3' -60.3 NC_002794.1 + 66209 0.66 0.825645
Target:  5'- uCCCCGGgaaagcUCACCUccucuccuucuucgGC-CGGGCGcUUGCGg -3'
miRNA:   3'- -GGGGCC------AGUGGG--------------UGaGCUCGC-AGCGC- -5'
10906 3' -60.3 NC_002794.1 + 59650 0.66 0.803661
Target:  5'- uCCCCGGUCGCCacggCGCUgcaGAGCcgccugCGCc -3'
miRNA:   3'- -GGGGCCAGUGG----GUGAg--CUCGca----GCGc -5'
10906 3' -60.3 NC_002794.1 + 58089 0.67 0.760431
Target:  5'- gCCCGG-CGCCCgcGCUCGAcCGcUGCGu -3'
miRNA:   3'- gGGGCCaGUGGG--UGAGCUcGCaGCGC- -5'
10906 3' -60.3 NC_002794.1 + 57382 0.69 0.638711
Target:  5'- aCCCCGccaccuacGUCACCgGCUCcGGCGccCGCGu -3'
miRNA:   3'- -GGGGC--------CAGUGGgUGAGcUCGCa-GCGC- -5'
10906 3' -60.3 NC_002794.1 + 56827 0.67 0.778075
Target:  5'- gCCCUGGcCGCCCACacCGuGCGcuUCGaCGa -3'
miRNA:   3'- -GGGGCCaGUGGGUGa-GCuCGC--AGC-GC- -5'
10906 3' -60.3 NC_002794.1 + 56535 0.66 0.82802
Target:  5'- uUCCGGUCGCCa--UCcgGAGCGcUCGCc -3'
miRNA:   3'- gGGGCCAGUGGgugAG--CUCGC-AGCGc -5'
10906 3' -60.3 NC_002794.1 + 53241 0.66 0.811926
Target:  5'- uCCUCGGccCGCCgCGC-CG-GCGUCGCc -3'
miRNA:   3'- -GGGGCCa-GUGG-GUGaGCuCGCAGCGc -5'
10906 3' -60.3 NC_002794.1 + 52396 0.71 0.525041
Target:  5'- aCCCGGUCgacuACCUGCUCGAGCa--GCu -3'
miRNA:   3'- gGGGCCAG----UGGGUGAGCUCGcagCGc -5'
10906 3' -60.3 NC_002794.1 + 50820 0.82 0.127764
Target:  5'- gCUCCGG-CGCCCccgccCUCGGGCGUCGCGa -3'
miRNA:   3'- -GGGGCCaGUGGGu----GAGCUCGCAGCGC- -5'
10906 3' -60.3 NC_002794.1 + 50786 0.66 0.850972
Target:  5'- gUCUCGGgcggCGCCUcCUCGcccGGCGUCGgGc -3'
miRNA:   3'- -GGGGCCa---GUGGGuGAGC---UCGCAGCgC- -5'
10906 3' -60.3 NC_002794.1 + 46262 0.66 0.811926
Target:  5'- uCCUCGGgccgUCGacCCCACUcCGAGCGUUcCGa -3'
miRNA:   3'- -GGGGCC----AGU--GGGUGA-GCUCGCAGcGC- -5'
10906 3' -60.3 NC_002794.1 + 46190 0.71 0.56237
Target:  5'- aCCCCGG-CACCgCGCUCGcuCGcCGCc -3'
miRNA:   3'- -GGGGCCaGUGG-GUGAGCucGCaGCGc -5'
10906 3' -60.3 NC_002794.1 + 45946 0.71 0.534292
Target:  5'- gCCCGGUgACCgucuCUCGGGCG-CGUGa -3'
miRNA:   3'- gGGGCCAgUGGgu--GAGCUCGCaGCGC- -5'
10906 3' -60.3 NC_002794.1 + 42927 0.67 0.786728
Target:  5'- gUCCgGGUCAcgauCCCGCUCGccaUGUCGCc -3'
miRNA:   3'- -GGGgCCAGU----GGGUGAGCuc-GCAGCGc -5'
10906 3' -60.3 NC_002794.1 + 42211 0.68 0.705347
Target:  5'- gCCgCCGGUCugCCGCUgGAucaGcCGCGa -3'
miRNA:   3'- -GG-GGCCAGugGGUGAgCUcg-CaGCGC- -5'
10906 3' -60.3 NC_002794.1 + 38402 0.82 0.134124
Target:  5'- gUCCCGGUCACCCGg-CGAGCGcUCGCc -3'
miRNA:   3'- -GGGGCCAGUGGGUgaGCUCGC-AGCGc -5'
10906 3' -60.3 NC_002794.1 + 37950 0.66 0.843488
Target:  5'- gCCUCGGcgACUCGCUCG-GCGgcUCGUGg -3'
miRNA:   3'- -GGGGCCagUGGGUGAGCuCGC--AGCGC- -5'
10906 3' -60.3 NC_002794.1 + 37866 0.7 0.609945
Target:  5'- uCUCCGGUCGgCguCUCGGGCGgCGgGg -3'
miRNA:   3'- -GGGGCCAGUgGguGAGCUCGCaGCgC- -5'
10906 3' -60.3 NC_002794.1 + 36235 0.69 0.676016
Target:  5'- gCCCGGUCgauauagGCCCcguAgUCGAugGCGUCGUGu -3'
miRNA:   3'- gGGGCCAG-------UGGG---UgAGCU--CGCAGCGC- -5'
10906 3' -60.3 NC_002794.1 + 35550 0.68 0.733235
Target:  5'- aCCCGG-CGCUCGCgcgCGcGCGUgGUGg -3'
miRNA:   3'- gGGGCCaGUGGGUGa--GCuCGCAgCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.