miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10906 3' -60.3 NC_002794.1 + 69835 0.66 0.843488
Target:  5'- gCCCGGUcCGCUgGCUCaccGCcUCGCGa -3'
miRNA:   3'- gGGGCCA-GUGGgUGAGcu-CGcAGCGC- -5'
10906 3' -60.3 NC_002794.1 + 126113 0.66 0.843488
Target:  5'- gCCCUGGgCGCCgCGCUCGucuGCGcCGg- -3'
miRNA:   3'- -GGGGCCaGUGG-GUGAGCu--CGCaGCgc -5'
10906 3' -60.3 NC_002794.1 + 147254 0.66 0.850972
Target:  5'- aCUCCGGgCAgaCGCUCGAGCuGcCGUGg -3'
miRNA:   3'- -GGGGCCaGUggGUGAGCUCG-CaGCGC- -5'
10906 3' -60.3 NC_002794.1 + 50786 0.66 0.850972
Target:  5'- gUCUCGGgcggCGCCUcCUCGcccGGCGUCGgGc -3'
miRNA:   3'- -GGGGCCa---GUGGGuGAGC---UCGCAGCgC- -5'
10906 3' -60.3 NC_002794.1 + 151690 0.66 0.850972
Target:  5'- aCUUgGGUCGCCCcgccgGC-CGAGCGcgccagUCGCGc -3'
miRNA:   3'- -GGGgCCAGUGGG-----UGaGCUCGC------AGCGC- -5'
10906 3' -60.3 NC_002794.1 + 70631 0.66 0.835836
Target:  5'- gCCCCGGUCGCaCCGCcaccagguucUUGGccuCGUgCGCGg -3'
miRNA:   3'- -GGGGCCAGUG-GGUG----------AGCUc--GCA-GCGC- -5'
10906 3' -60.3 NC_002794.1 + 191807 0.66 0.82802
Target:  5'- gCCCGcUCGgCCGCUCGAGgacCGCGa -3'
miRNA:   3'- gGGGCcAGUgGGUGAGCUCgcaGCGC- -5'
10906 3' -60.3 NC_002794.1 + 14254 0.66 0.806984
Target:  5'- aCCgCCGGcUCgACCCcgaccgagguguucgGCUgGAGCGUCaGCGu -3'
miRNA:   3'- -GG-GGCC-AG-UGGG---------------UGAgCUCGCAG-CGC- -5'
10906 3' -60.3 NC_002794.1 + 124318 0.66 0.818436
Target:  5'- gCCCGGUCgaucgacccgcgACCCACgucCGAGCucucucucucucUCGCGu -3'
miRNA:   3'- gGGGCCAG------------UGGGUGa--GCUCGc-----------AGCGC- -5'
10906 3' -60.3 NC_002794.1 + 53241 0.66 0.811926
Target:  5'- uCCUCGGccCGCCgCGC-CG-GCGUCGCc -3'
miRNA:   3'- -GGGGCCa-GUGG-GUGaGCuCGCAGCGc -5'
10906 3' -60.3 NC_002794.1 + 46262 0.66 0.811926
Target:  5'- uCCUCGGgccgUCGacCCCACUcCGAGCGUUcCGa -3'
miRNA:   3'- -GGGGCC----AGU--GGGUGA-GCUCGCAGcGC- -5'
10906 3' -60.3 NC_002794.1 + 75621 0.66 0.820048
Target:  5'- aUCCCGGUCugguACCCuuuCUCGcuacacacgAGCGgcaGCGg -3'
miRNA:   3'- -GGGGCCAG----UGGGu--GAGC---------UCGCag-CGC- -5'
10906 3' -60.3 NC_002794.1 + 182679 0.66 0.820048
Target:  5'- aCCCGGUC-CCCG---GAGCGcuUCGCu -3'
miRNA:   3'- gGGGCCAGuGGGUgagCUCGC--AGCGc -5'
10906 3' -60.3 NC_002794.1 + 66209 0.66 0.825645
Target:  5'- uCCCCGGgaaagcUCACCUccucuccuucuucgGC-CGGGCGcUUGCGg -3'
miRNA:   3'- -GGGGCC------AGUGGG--------------UGaGCUCGC-AGCGC- -5'
10906 3' -60.3 NC_002794.1 + 56535 0.66 0.82802
Target:  5'- uUCCGGUCGCCa--UCcgGAGCGcUCGCc -3'
miRNA:   3'- gGGGCCAGUGGgugAG--CUCGC-AGCGc -5'
10906 3' -60.3 NC_002794.1 + 137088 0.66 0.82802
Target:  5'- gCCauGUCGCCCGCUCGcGCuccuucCGCGa -3'
miRNA:   3'- gGGgcCAGUGGGUGAGCuCGca----GCGC- -5'
10906 3' -60.3 NC_002794.1 + 113515 0.66 0.82802
Target:  5'- gCCgCGGagggagcucCGCCgGCUCG-GCGUCGCc -3'
miRNA:   3'- -GGgGCCa--------GUGGgUGAGCuCGCAGCGc -5'
10906 3' -60.3 NC_002794.1 + 141594 0.66 0.82802
Target:  5'- gCCCGcGUCGCCgggcgGCUCG-GCGaccggcUCGCGg -3'
miRNA:   3'- gGGGC-CAGUGGg----UGAGCuCGC------AGCGC- -5'
10906 3' -60.3 NC_002794.1 + 132296 0.66 0.82802
Target:  5'- aCUCGGUCACCgUAUUCcacAGCGUgGUGa -3'
miRNA:   3'- gGGGCCAGUGG-GUGAGc--UCGCAgCGC- -5'
10906 3' -60.3 NC_002794.1 + 86914 0.66 0.831166
Target:  5'- aCCCGGUgaCGCCCguggcgggcagGCggggcgggauccggCGAGCGUCGaCGu -3'
miRNA:   3'- gGGGCCA--GUGGG-----------UGa-------------GCUCGCAGC-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.