Results 81 - 98 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10906 | 3' | -60.3 | NC_002794.1 | + | 8714 | 0.67 | 0.763993 |
Target: 5'- gCCCCGGguccaCACCCcccagaccguggagcGCgugucUCGGGCGugUCGCGa -3' miRNA: 3'- -GGGGCCa----GUGGG---------------UG-----AGCUCGC--AGCGC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 58089 | 0.67 | 0.760431 |
Target: 5'- gCCCGG-CGCCCgcGCUCGAcCGcUGCGu -3' miRNA: 3'- gGGGCCaGUGGG--UGAGCUcGCaGCGC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 130509 | 0.67 | 0.760431 |
Target: 5'- gCgCC--UCGCCCACUCGAGCGggcugacCGUGa -3' miRNA: 3'- -GgGGccAGUGGGUGAGCUCGCa------GCGC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 35550 | 0.68 | 0.733235 |
Target: 5'- aCCCGG-CGCUCGCgcgCGcGCGUgGUGg -3' miRNA: 3'- gGGGCCaGUGGGUGa--GCuCGCAgCGC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 107212 | 0.68 | 0.733235 |
Target: 5'- gCCCGG-CG-CCGC-CGGGCGgcgCGCGa -3' miRNA: 3'- gGGGCCaGUgGGUGaGCUCGCa--GCGC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 42927 | 0.67 | 0.786728 |
Target: 5'- gUCCgGGUCAcgauCCCGCUCGccaUGUCGCc -3' miRNA: 3'- -GGGgCCAGU----GGGUGAGCuc-GCAGCGc -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 185562 | 0.67 | 0.778075 |
Target: 5'- gCCCCGccCugCCGCggcaGGGCG-CGCGg -3' miRNA: 3'- -GGGGCcaGugGGUGag--CUCGCaGCGC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 53241 | 0.66 | 0.811926 |
Target: 5'- uCCUCGGccCGCCgCGC-CG-GCGUCGCc -3' miRNA: 3'- -GGGGCCa-GUGG-GUGaGCuCGCAGCGc -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 124318 | 0.66 | 0.818436 |
Target: 5'- gCCCGGUCgaucgacccgcgACCCACgucCGAGCucucucucucucUCGCGu -3' miRNA: 3'- gGGGCCAG------------UGGGUGa--GCUCGc-----------AGCGC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 14254 | 0.66 | 0.806984 |
Target: 5'- aCCgCCGGcUCgACCCcgaccgagguguucgGCUgGAGCGUCaGCGu -3' miRNA: 3'- -GG-GGCC-AG-UGGG---------------UGAgCUCGCAG-CGC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 59650 | 0.66 | 0.803661 |
Target: 5'- uCCCCGGUCGCCacggCGCUgcaGAGCcgccugCGCc -3' miRNA: 3'- -GGGGCCAGUGG----GUGAg--CUCGca----GCGc -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 29750 | 0.66 | 0.803661 |
Target: 5'- -aCCGGgcgccgaGCCCGCgcCGAGCGUCuCGg -3' miRNA: 3'- ggGGCCag-----UGGGUGa-GCUCGCAGcGC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 21441 | 0.66 | 0.803661 |
Target: 5'- aCgUCGGUCucGCgUCGCUCG-GCGUCGCc -3' miRNA: 3'- -GgGGCCAG--UG-GGUGAGCuCGCAGCGc -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 102628 | 0.66 | 0.803661 |
Target: 5'- aCCUggCGGUCAUCCGC-CGgcuGGCGgCGCGc -3' miRNA: 3'- -GGG--GCCAGUGGGUGaGC---UCGCaGCGC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 81400 | 0.66 | 0.803661 |
Target: 5'- gCUCCGGUC-CCgGCUCGGGagcugcUCGCc -3' miRNA: 3'- -GGGGCCAGuGGgUGAGCUCgc----AGCGc -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 151027 | 0.67 | 0.792713 |
Target: 5'- gCCCgUGGUCGCCCGuCUgaugacgggCGAGUgcacggccgcgcagGUCGCGg -3' miRNA: 3'- -GGG-GCCAGUGGGU-GA---------GCUCG--------------CAGCGC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 133747 | 0.67 | 0.795259 |
Target: 5'- gUUCGGUCGCCUgcagggucccgACUCGAcCGcUCGCGa -3' miRNA: 3'- gGGGCCAGUGGG-----------UGAGCUcGC-AGCGC- -5' |
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10906 | 3' | -60.3 | NC_002794.1 | + | 143276 | 0.68 | 0.742388 |
Target: 5'- gCCCGG-CGCCgGCcgcucggggUCGGGCGggugcagCGCGg -3' miRNA: 3'- gGGGCCaGUGGgUG---------AGCUCGCa------GCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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