miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10906 5' -56.6 NC_002794.1 + 109454 0.66 0.943612
Target:  5'- gCCCGCCCucGCCuCCucuuuGUCUCcucgGAGCGu- -3'
miRNA:   3'- -GGGUGGG--UGG-GGu----CAGAGa---CUUGCuc -5'
10906 5' -56.6 NC_002794.1 + 61731 0.66 0.943612
Target:  5'- aCCGCCCGCCCCGcGgaagC-CcGcGCGAGg -3'
miRNA:   3'- gGGUGGGUGGGGU-Ca---GaGaCuUGCUC- -5'
10906 5' -56.6 NC_002794.1 + 34356 0.66 0.943612
Target:  5'- uUCCGCCCGCUCUA--C-CUGGACGAc -3'
miRNA:   3'- -GGGUGGGUGGGGUcaGaGACUUGCUc -5'
10906 5' -56.6 NC_002794.1 + 85276 0.66 0.943612
Target:  5'- -aCACCUcucgGCUCCGGUCagcggCUGAgACGAGg -3'
miRNA:   3'- ggGUGGG----UGGGGUCAGa----GACU-UGCUC- -5'
10906 5' -56.6 NC_002794.1 + 128388 0.66 0.943612
Target:  5'- uCUCGCCgAUCCCGGa---UGGGCGAGg -3'
miRNA:   3'- -GGGUGGgUGGGGUCagagACUUGCUC- -5'
10906 5' -56.6 NC_002794.1 + 48558 0.66 0.939125
Target:  5'- cUCCGCCgGCCgCCcGUCcagaUGGGCGAGc -3'
miRNA:   3'- -GGGUGGgUGG-GGuCAGag--ACUUGCUC- -5'
10906 5' -56.6 NC_002794.1 + 35979 0.66 0.939125
Target:  5'- gCCCGCUCGCggaCCCGGUUUUauUGucGCGGGg -3'
miRNA:   3'- -GGGUGGGUG---GGGUCAGAG--ACu-UGCUC- -5'
10906 5' -56.6 NC_002794.1 + 1063 0.66 0.939125
Target:  5'- gCCCGCCCccCCCCGGgggUUCguuuCGGGg -3'
miRNA:   3'- -GGGUGGGu-GGGGUCa--GAGacuuGCUC- -5'
10906 5' -56.6 NC_002794.1 + 177474 0.66 0.934415
Target:  5'- uCCCACCCGCCCgC-GUCaUCau--CGAGa -3'
miRNA:   3'- -GGGUGGGUGGG-GuCAG-AGacuuGCUC- -5'
10906 5' -56.6 NC_002794.1 + 24233 0.66 0.933932
Target:  5'- gUCCACCCACCCCgacgacccagguaGGUaCUCgGAAaGAc -3'
miRNA:   3'- -GGGUGGGUGGGG-------------UCA-GAGaCUUgCUc -5'
10906 5' -56.6 NC_002794.1 + 190739 0.66 0.92948
Target:  5'- -gCGCCCGCCgCC-GUCUCgacggGGGCGGc -3'
miRNA:   3'- ggGUGGGUGG-GGuCAGAGa----CUUGCUc -5'
10906 5' -56.6 NC_002794.1 + 98886 0.66 0.924321
Target:  5'- uCCCAuCCCGCCguucaugcgCGGUCUCgacgacuucaUGAGCGGGc -3'
miRNA:   3'- -GGGU-GGGUGGg--------GUCAGAG----------ACUUGCUC- -5'
10906 5' -56.6 NC_002794.1 + 26157 0.66 0.918385
Target:  5'- cCCCAacacacuCCCACaCCCAG-CUCcGcGCGGGa -3'
miRNA:   3'- -GGGU-------GGGUG-GGGUCaGAGaCuUGCUC- -5'
10906 5' -56.6 NC_002794.1 + 90234 0.67 0.913327
Target:  5'- cCCCGCCUgugguCCCCgcgcgcguGGUCUCcGcGCGAGu -3'
miRNA:   3'- -GGGUGGGu----GGGG--------UCAGAGaCuUGCUC- -5'
10906 5' -56.6 NC_002794.1 + 24054 0.67 0.909854
Target:  5'- gUCCGCCCGCCCCGGaccacacccgugcgC-CcGGGCGGGc -3'
miRNA:   3'- -GGGUGGGUGGGGUCa-------------GaGaCUUGCUC- -5'
10906 5' -56.6 NC_002794.1 + 141243 0.67 0.88868
Target:  5'- uCCCgaACCCGgCgCCGGUCcguucaaCUGGACGGGg -3'
miRNA:   3'- -GGG--UGGGUgG-GGUCAGa------GACUUGCUC- -5'
10906 5' -56.6 NC_002794.1 + 4407 0.68 0.881979
Target:  5'- gCCCACCC-CCCCGG-CUCUuGuGCa-- -3'
miRNA:   3'- -GGGUGGGuGGGGUCaGAGA-CuUGcuc -5'
10906 5' -56.6 NC_002794.1 + 63224 0.68 0.875069
Target:  5'- aCCugCCGCCCCugcGcCUCcgcgccGAACGGGa -3'
miRNA:   3'- gGGugGGUGGGGu--CaGAGa-----CUUGCUC- -5'
10906 5' -56.6 NC_002794.1 + 19359 0.68 0.86064
Target:  5'- gCCGCCCGCCCCGcccggaUC-GGGCGGGc -3'
miRNA:   3'- gGGUGGGUGGGGUcag---AGaCUUGCUC- -5'
10906 5' -56.6 NC_002794.1 + 68716 0.68 0.86064
Target:  5'- gCUCGcCCCACCCCGgGUCUUcGAACa-- -3'
miRNA:   3'- -GGGU-GGGUGGGGU-CAGAGaCUUGcuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.