miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10907 3' -52 NC_002794.1 + 43774 0.66 0.995697
Target:  5'- gCCAGAUcucgccgaacgccccGCGUCCgaCCCGccgcuccGGGCCCa -3'
miRNA:   3'- gGGUUUA---------------UGUAGGgaGGGU-------UCUGGGc -5'
10907 3' -52 NC_002794.1 + 155927 0.66 0.995498
Target:  5'- gCCGGGUGCuugCCgUCaCCGGGGCUCu -3'
miRNA:   3'- gGGUUUAUGua-GGgAG-GGUUCUGGGc -5'
10907 3' -52 NC_002794.1 + 187053 0.66 0.995498
Target:  5'- uCCCGGAgcccGCggCCCg-CCAGGugCCGc -3'
miRNA:   3'- -GGGUUUa---UGuaGGGagGGUUCugGGC- -5'
10907 3' -52 NC_002794.1 + 47374 0.66 0.995498
Target:  5'- gCCGAGgcCGagCCCgagCCCGAG-CCCGa -3'
miRNA:   3'- gGGUUUauGUa-GGGa--GGGUUCuGGGC- -5'
10907 3' -52 NC_002794.1 + 112573 0.66 0.995498
Target:  5'- aCCCG---GCcgCUCUCcagcugcgCCAGGGCCCGu -3'
miRNA:   3'- -GGGUuuaUGuaGGGAG--------GGUUCUGGGC- -5'
10907 3' -52 NC_002794.1 + 19582 0.66 0.994777
Target:  5'- aCCCA-----GUgCCUCCUccGGCCCGg -3'
miRNA:   3'- -GGGUuuaugUAgGGAGGGuuCUGGGC- -5'
10907 3' -52 NC_002794.1 + 34678 0.66 0.994051
Target:  5'- aCC-AGUACGUCaCCUUCCucgucacccgccagcAGGCCCGc -3'
miRNA:   3'- gGGuUUAUGUAG-GGAGGGu--------------UCUGGGC- -5'
10907 3' -52 NC_002794.1 + 76430 0.66 0.993056
Target:  5'- gCCAAGcgcCAUCCUccCCCGAG-CCCGu -3'
miRNA:   3'- gGGUUUau-GUAGGGa-GGGUUCuGGGC- -5'
10907 3' -52 NC_002794.1 + 67016 0.66 0.993056
Target:  5'- gUCCGGcgGCGgcggCCggCUCCCGccgcgucgcGGACCCGg -3'
miRNA:   3'- -GGGUUuaUGUa---GG--GAGGGU---------UCUGGGC- -5'
10907 3' -52 NC_002794.1 + 21740 0.66 0.993056
Target:  5'- gCCGAagcgGUGCGccUCCCUCCaCGGGAUCg- -3'
miRNA:   3'- gGGUU----UAUGU--AGGGAGG-GUUCUGGgc -5'
10907 3' -52 NC_002794.1 + 86655 0.66 0.993056
Target:  5'- -aCGGAUGC-UCCggCCCGAG-CCCGa -3'
miRNA:   3'- ggGUUUAUGuAGGgaGGGUUCuGGGC- -5'
10907 3' -52 NC_002794.1 + 86295 0.66 0.993056
Target:  5'- -aCGGAUGC-UCCggCCCGAG-CCCGa -3'
miRNA:   3'- ggGUUUAUGuAGGgaGGGUUCuGGGC- -5'
10907 3' -52 NC_002794.1 + 86103 0.66 0.993056
Target:  5'- -aCGGAUGC-UCCggCCCGAG-CCCGa -3'
miRNA:   3'- ggGUUUAUGuAGGgaGGGUUCuGGGC- -5'
10907 3' -52 NC_002794.1 + 72930 0.66 0.99204
Target:  5'- gUCGGAgccgGCGUCCgCgcgCCCAccGGGCCCa -3'
miRNA:   3'- gGGUUUa---UGUAGG-Ga--GGGU--UCUGGGc -5'
10907 3' -52 NC_002794.1 + 12854 0.66 0.99204
Target:  5'- aCCGAGUGgGggaCCaCCUggGACCCGc -3'
miRNA:   3'- gGGUUUAUgUag-GGaGGGuuCUGGGC- -5'
10907 3' -52 NC_002794.1 + 184215 0.66 0.99204
Target:  5'- cCCCGAAccaGC-UCCCggCCCAGuuCCCGg -3'
miRNA:   3'- -GGGUUUa--UGuAGGGa-GGGUUcuGGGC- -5'
10907 3' -52 NC_002794.1 + 17022 0.67 0.990909
Target:  5'- aCCCGGcgGCgGUCCCauggaaCUGAGACCCu -3'
miRNA:   3'- -GGGUUuaUG-UAGGGag----GGUUCUGGGc -5'
10907 3' -52 NC_002794.1 + 104436 0.67 0.990909
Target:  5'- gCCCGGAcGCcgCCgCgggcggCCCGAG-CCCGg -3'
miRNA:   3'- -GGGUUUaUGuaGG-Ga-----GGGUUCuGGGC- -5'
10907 3' -52 NC_002794.1 + 35628 0.67 0.989655
Target:  5'- gCCAc---CAUCUC-CCgCAAGACCCGg -3'
miRNA:   3'- gGGUuuauGUAGGGaGG-GUUCUGGGC- -5'
10907 3' -52 NC_002794.1 + 135945 0.67 0.988271
Target:  5'- cUCCAugaaagaggaGAUGgAUUCCUCCuCGAG-CCCGg -3'
miRNA:   3'- -GGGU----------UUAUgUAGGGAGG-GUUCuGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.