miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10907 3' -52 NC_002794.1 + 7422 1.13 0.00584
Target:  5'- aCCCAAAUACAUCCCUCCCAAGACCCGg -3'
miRNA:   3'- -GGGUUUAUGUAGGGAGGGUUCUGGGC- -5'
10907 3' -52 NC_002794.1 + 35522 0.77 0.627405
Target:  5'- gCCCAGcgucUACAUCCUgcaCCgCGAGACCCGg -3'
miRNA:   3'- -GGGUUu---AUGUAGGGa--GG-GUUCUGGGC- -5'
10907 3' -52 NC_002794.1 + 189583 0.74 0.821602
Target:  5'- gCCCGGGccgGCGcCCCUuagcccguccgCCCGAGACCCGc -3'
miRNA:   3'- -GGGUUUa--UGUaGGGA-----------GGGUUCUGGGC- -5'
10907 3' -52 NC_002794.1 + 41800 0.73 0.830083
Target:  5'- cCCCGAAgcagACGUCCagcgaggcgCCCAgcAGGCCCGu -3'
miRNA:   3'- -GGGUUUa---UGUAGGga-------GGGU--UCUGGGC- -5'
10907 3' -52 NC_002794.1 + 23705 0.72 0.869636
Target:  5'- cCCCGAA-GCGUCCCgaaCCGcgcgcggcGGGCCCGa -3'
miRNA:   3'- -GGGUUUaUGUAGGGag-GGU--------UCUGGGC- -5'
10907 3' -52 NC_002794.1 + 6881 0.71 0.903867
Target:  5'- aCCAGA-AgAUCCCcCCCGAGugCCa -3'
miRNA:   3'- gGGUUUaUgUAGGGaGGGUUCugGGc -5'
10907 3' -52 NC_002794.1 + 151965 0.71 0.910024
Target:  5'- cCCCGGGUGC-UCCUcggCCCGGGACgUGg -3'
miRNA:   3'- -GGGUUUAUGuAGGGa--GGGUUCUGgGC- -5'
10907 3' -52 NC_002794.1 + 44960 0.71 0.910024
Target:  5'- aCCCGGGUACAUUCCaguUCCCu-GGCCa- -3'
miRNA:   3'- -GGGUUUAUGUAGGG---AGGGuuCUGGgc -5'
10907 3' -52 NC_002794.1 + 53174 0.71 0.927065
Target:  5'- cCCCGAAgcucgGCAgggCCCagCCGAGccACCCGg -3'
miRNA:   3'- -GGGUUUa----UGUa--GGGagGGUUC--UGGGC- -5'
10907 3' -52 NC_002794.1 + 193861 0.71 0.927065
Target:  5'- gCCCAcc--CAcCCCUCCCcGGGCCCc -3'
miRNA:   3'- -GGGUuuauGUaGGGAGGGuUCUGGGc -5'
10907 3' -52 NC_002794.1 + 38226 0.7 0.937227
Target:  5'- -aCAGAUAgGUCCg-CCgCAAGACCCGc -3'
miRNA:   3'- ggGUUUAUgUAGGgaGG-GUUCUGGGC- -5'
10907 3' -52 NC_002794.1 + 18296 0.7 0.937227
Target:  5'- aCCGA--GCcgCCCUCUCGAGgGCCCu -3'
miRNA:   3'- gGGUUuaUGuaGGGAGGGUUC-UGGGc -5'
10907 3' -52 NC_002794.1 + 30520 0.7 0.937227
Target:  5'- aCCAAGcGCGgcagCCCgcgCuCCAAGACCCu -3'
miRNA:   3'- gGGUUUaUGUa---GGGa--G-GGUUCUGGGc -5'
10907 3' -52 NC_002794.1 + 39768 0.7 0.93771
Target:  5'- uCCCAGAUGCccacguaacucgccAUCCC-CCCGGGcgccgaccguuuuucGCCCGc -3'
miRNA:   3'- -GGGUUUAUG--------------UAGGGaGGGUUC---------------UGGGC- -5'
10907 3' -52 NC_002794.1 + 58262 0.7 0.946437
Target:  5'- aCCGAGcUGCAcCCCUUCUucGACCUGa -3'
miRNA:   3'- gGGUUU-AUGUaGGGAGGGuuCUGGGC- -5'
10907 3' -52 NC_002794.1 + 190893 0.7 0.954709
Target:  5'- cCCCAGGUACAggagaaaccgcgUCUgCUCCCAcuccccGGCCCGc -3'
miRNA:   3'- -GGGUUUAUGU------------AGG-GAGGGUu-----CUGGGC- -5'
10907 3' -52 NC_002794.1 + 179386 0.69 0.958132
Target:  5'- gCUCAAAUACAguaacgcgagcggUaaacagaaaaCCCUCCCGGGcCCCGg -3'
miRNA:   3'- -GGGUUUAUGU-------------A----------GGGAGGGUUCuGGGC- -5'
10907 3' -52 NC_002794.1 + 124145 0.69 0.96207
Target:  5'- gCCCGGGaGCGg-UCUCCgCGGGGCCCGg -3'
miRNA:   3'- -GGGUUUaUGUagGGAGG-GUUCUGGGC- -5'
10907 3' -52 NC_002794.1 + 183488 0.69 0.96207
Target:  5'- gCCCGAuccccGCGcgaaCCCggcCCCGAGACCCa -3'
miRNA:   3'- -GGGUUua---UGUa---GGGa--GGGUUCUGGGc -5'
10907 3' -52 NC_002794.1 + 8170 0.69 0.96542
Target:  5'- cCCCGGGcccgGCGUCCCgCCCGGuuucccACCCGg -3'
miRNA:   3'- -GGGUUUa---UGUAGGGaGGGUUc-----UGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.