Results 21 - 40 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10907 | 3' | -52 | NC_002794.1 | + | 8170 | 0.69 | 0.96542 |
Target: 5'- cCCCGGGcccgGCGUCCCgCCCGGuuucccACCCGg -3' miRNA: 3'- -GGGUUUa---UGUAGGGaGGGUUc-----UGGGC- -5' |
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10907 | 3' | -52 | NC_002794.1 | + | 102737 | 0.69 | 0.968556 |
Target: 5'- gCCCAAcUACGagCUggCCgAGGACCCGg -3' miRNA: 3'- -GGGUUuAUGUagGGa-GGgUUCUGGGC- -5' |
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10907 | 3' | -52 | NC_002794.1 | + | 135448 | 0.68 | 0.976744 |
Target: 5'- aCCCG---ACGgg-CUCCCGGGGCCCGc -3' miRNA: 3'- -GGGUuuaUGUaggGAGGGUUCUGGGC- -5' |
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10907 | 3' | -52 | NC_002794.1 | + | 85132 | 0.68 | 0.977704 |
Target: 5'- aCCCAG--ACGUCuUCUCCauagccgccuucuaGAGACCCGa -3' miRNA: 3'- -GGGUUuaUGUAG-GGAGGg-------------UUCUGGGC- -5' |
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10907 | 3' | -52 | NC_002794.1 | + | 146013 | 0.68 | 0.981253 |
Target: 5'- gCCGGAgacgcCGUCCCaguccgcucgaUCuCCGGGACCCGu -3' miRNA: 3'- gGGUUUau---GUAGGG-----------AG-GGUUCUGGGC- -5' |
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10907 | 3' | -52 | NC_002794.1 | + | 76326 | 0.68 | 0.981253 |
Target: 5'- aCCAGucguCcUCCCUCCCGGcGGCCgGg -3' miRNA: 3'- gGGUUuau-GuAGGGAGGGUU-CUGGgC- -5' |
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10907 | 3' | -52 | NC_002794.1 | + | 114792 | 0.68 | 0.983246 |
Target: 5'- gCCCAGGU-UGUCUCgcaggUCCCGgAGGCCCGc -3' miRNA: 3'- -GGGUUUAuGUAGGG-----AGGGU-UCUGGGC- -5' |
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10907 | 3' | -52 | NC_002794.1 | + | 5425 | 0.68 | 0.983246 |
Target: 5'- aCCGGAagACcuGUCCa-CCCGAGACCCu -3' miRNA: 3'- gGGUUUa-UG--UAGGgaGGGUUCUGGGc -5' |
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10907 | 3' | -52 | NC_002794.1 | + | 82542 | 0.68 | 0.983246 |
Target: 5'- cUCCGucaGCggCCCUCCCGccGGCCCa -3' miRNA: 3'- -GGGUuuaUGuaGGGAGGGUu-CUGGGc -5' |
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10907 | 3' | -52 | NC_002794.1 | + | 64604 | 0.68 | 0.983246 |
Target: 5'- uCCCGGAggACGUCUUcgUCCC--GACCCGc -3' miRNA: 3'- -GGGUUUa-UGUAGGG--AGGGuuCUGGGC- -5' |
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10907 | 3' | -52 | NC_002794.1 | + | 80356 | 0.68 | 0.983246 |
Target: 5'- gUCCAAuaagcGCGUCCgggCCCAGGGCCUc -3' miRNA: 3'- -GGGUUua---UGUAGGga-GGGUUCUGGGc -5' |
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10907 | 3' | -52 | NC_002794.1 | + | 28287 | 0.67 | 0.985074 |
Target: 5'- aCCCAAcUGauuaggauUCCCUCCCua-ACCCGu -3' miRNA: 3'- -GGGUUuAUgu------AGGGAGGGuucUGGGC- -5' |
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10907 | 3' | -52 | NC_002794.1 | + | 19413 | 0.67 | 0.985074 |
Target: 5'- aCCCGGAUcggGCGcgCCCUCcuccgcgaCCAGGcCCCGa -3' miRNA: 3'- -GGGUUUA---UGUa-GGGAG--------GGUUCuGGGC- -5' |
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10907 | 3' | -52 | NC_002794.1 | + | 191730 | 0.67 | 0.986746 |
Target: 5'- gCCCAcggACGcgaCCUCCgAGGACUCGg -3' miRNA: 3'- -GGGUuuaUGUag-GGAGGgUUCUGGGC- -5' |
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10907 | 3' | -52 | NC_002794.1 | + | 67733 | 0.67 | 0.986746 |
Target: 5'- uCCCGGcgGCggCCa-CCCGAG-CCCGg -3' miRNA: 3'- -GGGUUuaUGuaGGgaGGGUUCuGGGC- -5' |
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10907 | 3' | -52 | NC_002794.1 | + | 135945 | 0.67 | 0.988271 |
Target: 5'- cUCCAugaaagaggaGAUGgAUUCCUCCuCGAG-CCCGg -3' miRNA: 3'- -GGGU----------UUAUgUAGGGAGG-GUUCuGGGC- -5' |
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10907 | 3' | -52 | NC_002794.1 | + | 179138 | 0.67 | 0.988271 |
Target: 5'- gUCGAu--CGUCUCUCCCuuaccAGACCUGg -3' miRNA: 3'- gGGUUuauGUAGGGAGGGu----UCUGGGC- -5' |
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10907 | 3' | -52 | NC_002794.1 | + | 35628 | 0.67 | 0.989655 |
Target: 5'- gCCAc---CAUCUC-CCgCAAGACCCGg -3' miRNA: 3'- gGGUuuauGUAGGGaGG-GUUCUGGGC- -5' |
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10907 | 3' | -52 | NC_002794.1 | + | 104436 | 0.67 | 0.990909 |
Target: 5'- gCCCGGAcGCcgCCgCgggcggCCCGAG-CCCGg -3' miRNA: 3'- -GGGUUUaUGuaGG-Ga-----GGGUUCuGGGC- -5' |
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10907 | 3' | -52 | NC_002794.1 | + | 17022 | 0.67 | 0.990909 |
Target: 5'- aCCCGGcgGCgGUCCCauggaaCUGAGACCCu -3' miRNA: 3'- -GGGUUuaUG-UAGGGag----GGUUCUGGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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