Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10907 | 3' | -52 | NC_002794.1 | + | 43774 | 0.66 | 0.995697 |
Target: 5'- gCCAGAUcucgccgaacgccccGCGUCCgaCCCGccgcuccGGGCCCa -3' miRNA: 3'- gGGUUUA---------------UGUAGGgaGGGU-------UCUGGGc -5' |
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10907 | 3' | -52 | NC_002794.1 | + | 155927 | 0.66 | 0.995498 |
Target: 5'- gCCGGGUGCuugCCgUCaCCGGGGCUCu -3' miRNA: 3'- gGGUUUAUGua-GGgAG-GGUUCUGGGc -5' |
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10907 | 3' | -52 | NC_002794.1 | + | 187053 | 0.66 | 0.995498 |
Target: 5'- uCCCGGAgcccGCggCCCg-CCAGGugCCGc -3' miRNA: 3'- -GGGUUUa---UGuaGGGagGGUUCugGGC- -5' |
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10907 | 3' | -52 | NC_002794.1 | + | 47374 | 0.66 | 0.995498 |
Target: 5'- gCCGAGgcCGagCCCgagCCCGAG-CCCGa -3' miRNA: 3'- gGGUUUauGUa-GGGa--GGGUUCuGGGC- -5' |
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10907 | 3' | -52 | NC_002794.1 | + | 112573 | 0.66 | 0.995498 |
Target: 5'- aCCCG---GCcgCUCUCcagcugcgCCAGGGCCCGu -3' miRNA: 3'- -GGGUuuaUGuaGGGAG--------GGUUCUGGGC- -5' |
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10907 | 3' | -52 | NC_002794.1 | + | 19582 | 0.66 | 0.994777 |
Target: 5'- aCCCA-----GUgCCUCCUccGGCCCGg -3' miRNA: 3'- -GGGUuuaugUAgGGAGGGuuCUGGGC- -5' |
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10907 | 3' | -52 | NC_002794.1 | + | 34678 | 0.66 | 0.994051 |
Target: 5'- aCC-AGUACGUCaCCUUCCucgucacccgccagcAGGCCCGc -3' miRNA: 3'- gGGuUUAUGUAG-GGAGGGu--------------UCUGGGC- -5' |
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10907 | 3' | -52 | NC_002794.1 | + | 76430 | 0.66 | 0.993056 |
Target: 5'- gCCAAGcgcCAUCCUccCCCGAG-CCCGu -3' miRNA: 3'- gGGUUUau-GUAGGGa-GGGUUCuGGGC- -5' |
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10907 | 3' | -52 | NC_002794.1 | + | 67016 | 0.66 | 0.993056 |
Target: 5'- gUCCGGcgGCGgcggCCggCUCCCGccgcgucgcGGACCCGg -3' miRNA: 3'- -GGGUUuaUGUa---GG--GAGGGU---------UCUGGGC- -5' |
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10907 | 3' | -52 | NC_002794.1 | + | 21740 | 0.66 | 0.993056 |
Target: 5'- gCCGAagcgGUGCGccUCCCUCCaCGGGAUCg- -3' miRNA: 3'- gGGUU----UAUGU--AGGGAGG-GUUCUGGgc -5' |
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10907 | 3' | -52 | NC_002794.1 | + | 86655 | 0.66 | 0.993056 |
Target: 5'- -aCGGAUGC-UCCggCCCGAG-CCCGa -3' miRNA: 3'- ggGUUUAUGuAGGgaGGGUUCuGGGC- -5' |
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10907 | 3' | -52 | NC_002794.1 | + | 86295 | 0.66 | 0.993056 |
Target: 5'- -aCGGAUGC-UCCggCCCGAG-CCCGa -3' miRNA: 3'- ggGUUUAUGuAGGgaGGGUUCuGGGC- -5' |
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10907 | 3' | -52 | NC_002794.1 | + | 86103 | 0.66 | 0.993056 |
Target: 5'- -aCGGAUGC-UCCggCCCGAG-CCCGa -3' miRNA: 3'- ggGUUUAUGuAGGgaGGGUUCuGGGC- -5' |
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10907 | 3' | -52 | NC_002794.1 | + | 72930 | 0.66 | 0.99204 |
Target: 5'- gUCGGAgccgGCGUCCgCgcgCCCAccGGGCCCa -3' miRNA: 3'- gGGUUUa---UGUAGG-Ga--GGGU--UCUGGGc -5' |
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10907 | 3' | -52 | NC_002794.1 | + | 12854 | 0.66 | 0.99204 |
Target: 5'- aCCGAGUGgGggaCCaCCUggGACCCGc -3' miRNA: 3'- gGGUUUAUgUag-GGaGGGuuCUGGGC- -5' |
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10907 | 3' | -52 | NC_002794.1 | + | 184215 | 0.66 | 0.99204 |
Target: 5'- cCCCGAAccaGC-UCCCggCCCAGuuCCCGg -3' miRNA: 3'- -GGGUUUa--UGuAGGGa-GGGUUcuGGGC- -5' |
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10907 | 3' | -52 | NC_002794.1 | + | 17022 | 0.67 | 0.990909 |
Target: 5'- aCCCGGcgGCgGUCCCauggaaCUGAGACCCu -3' miRNA: 3'- -GGGUUuaUG-UAGGGag----GGUUCUGGGc -5' |
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10907 | 3' | -52 | NC_002794.1 | + | 104436 | 0.67 | 0.990909 |
Target: 5'- gCCCGGAcGCcgCCgCgggcggCCCGAG-CCCGg -3' miRNA: 3'- -GGGUUUaUGuaGG-Ga-----GGGUUCuGGGC- -5' |
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10907 | 3' | -52 | NC_002794.1 | + | 35628 | 0.67 | 0.989655 |
Target: 5'- gCCAc---CAUCUC-CCgCAAGACCCGg -3' miRNA: 3'- gGGUuuauGUAGGGaGG-GUUCUGGGC- -5' |
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10907 | 3' | -52 | NC_002794.1 | + | 135945 | 0.67 | 0.988271 |
Target: 5'- cUCCAugaaagaggaGAUGgAUUCCUCCuCGAG-CCCGg -3' miRNA: 3'- -GGGU----------UUAUgUAGGGAGG-GUUCuGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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