miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10907 3' -52 NC_002794.1 + 43774 0.66 0.995697
Target:  5'- gCCAGAUcucgccgaacgccccGCGUCCgaCCCGccgcuccGGGCCCa -3'
miRNA:   3'- gGGUUUA---------------UGUAGGgaGGGU-------UCUGGGc -5'
10907 3' -52 NC_002794.1 + 44960 0.71 0.910024
Target:  5'- aCCCGGGUACAUUCCaguUCCCu-GGCCa- -3'
miRNA:   3'- -GGGUUUAUGUAGGG---AGGGuuCUGGgc -5'
10907 3' -52 NC_002794.1 + 47374 0.66 0.995498
Target:  5'- gCCGAGgcCGagCCCgagCCCGAG-CCCGa -3'
miRNA:   3'- gGGUUUauGUa-GGGa--GGGUUCuGGGC- -5'
10907 3' -52 NC_002794.1 + 53174 0.71 0.927065
Target:  5'- cCCCGAAgcucgGCAgggCCCagCCGAGccACCCGg -3'
miRNA:   3'- -GGGUUUa----UGUa--GGGagGGUUC--UGGGC- -5'
10907 3' -52 NC_002794.1 + 58262 0.7 0.946437
Target:  5'- aCCGAGcUGCAcCCCUUCUucGACCUGa -3'
miRNA:   3'- gGGUUU-AUGUaGGGAGGGuuCUGGGC- -5'
10907 3' -52 NC_002794.1 + 64604 0.68 0.983246
Target:  5'- uCCCGGAggACGUCUUcgUCCC--GACCCGc -3'
miRNA:   3'- -GGGUUUa-UGUAGGG--AGGGuuCUGGGC- -5'
10907 3' -52 NC_002794.1 + 67016 0.66 0.993056
Target:  5'- gUCCGGcgGCGgcggCCggCUCCCGccgcgucgcGGACCCGg -3'
miRNA:   3'- -GGGUUuaUGUa---GG--GAGGGU---------UCUGGGC- -5'
10907 3' -52 NC_002794.1 + 67733 0.67 0.986746
Target:  5'- uCCCGGcgGCggCCa-CCCGAG-CCCGg -3'
miRNA:   3'- -GGGUUuaUGuaGGgaGGGUUCuGGGC- -5'
10907 3' -52 NC_002794.1 + 72930 0.66 0.99204
Target:  5'- gUCGGAgccgGCGUCCgCgcgCCCAccGGGCCCa -3'
miRNA:   3'- gGGUUUa---UGUAGG-Ga--GGGU--UCUGGGc -5'
10907 3' -52 NC_002794.1 + 76326 0.68 0.981253
Target:  5'- aCCAGucguCcUCCCUCCCGGcGGCCgGg -3'
miRNA:   3'- gGGUUuau-GuAGGGAGGGUU-CUGGgC- -5'
10907 3' -52 NC_002794.1 + 76430 0.66 0.993056
Target:  5'- gCCAAGcgcCAUCCUccCCCGAG-CCCGu -3'
miRNA:   3'- gGGUUUau-GUAGGGa-GGGUUCuGGGC- -5'
10907 3' -52 NC_002794.1 + 80356 0.68 0.983246
Target:  5'- gUCCAAuaagcGCGUCCgggCCCAGGGCCUc -3'
miRNA:   3'- -GGGUUua---UGUAGGga-GGGUUCUGGGc -5'
10907 3' -52 NC_002794.1 + 82542 0.68 0.983246
Target:  5'- cUCCGucaGCggCCCUCCCGccGGCCCa -3'
miRNA:   3'- -GGGUuuaUGuaGGGAGGGUu-CUGGGc -5'
10907 3' -52 NC_002794.1 + 85132 0.68 0.977704
Target:  5'- aCCCAG--ACGUCuUCUCCauagccgccuucuaGAGACCCGa -3'
miRNA:   3'- -GGGUUuaUGUAG-GGAGGg-------------UUCUGGGC- -5'
10907 3' -52 NC_002794.1 + 86103 0.66 0.993056
Target:  5'- -aCGGAUGC-UCCggCCCGAG-CCCGa -3'
miRNA:   3'- ggGUUUAUGuAGGgaGGGUUCuGGGC- -5'
10907 3' -52 NC_002794.1 + 86295 0.66 0.993056
Target:  5'- -aCGGAUGC-UCCggCCCGAG-CCCGa -3'
miRNA:   3'- ggGUUUAUGuAGGgaGGGUUCuGGGC- -5'
10907 3' -52 NC_002794.1 + 86655 0.66 0.993056
Target:  5'- -aCGGAUGC-UCCggCCCGAG-CCCGa -3'
miRNA:   3'- ggGUUUAUGuAGGgaGGGUUCuGGGC- -5'
10907 3' -52 NC_002794.1 + 102737 0.69 0.968556
Target:  5'- gCCCAAcUACGagCUggCCgAGGACCCGg -3'
miRNA:   3'- -GGGUUuAUGUagGGa-GGgUUCUGGGC- -5'
10907 3' -52 NC_002794.1 + 104436 0.67 0.990909
Target:  5'- gCCCGGAcGCcgCCgCgggcggCCCGAG-CCCGg -3'
miRNA:   3'- -GGGUUUaUGuaGG-Ga-----GGGUUCuGGGC- -5'
10907 3' -52 NC_002794.1 + 112573 0.66 0.995498
Target:  5'- aCCCG---GCcgCUCUCcagcugcgCCAGGGCCCGu -3'
miRNA:   3'- -GGGUuuaUGuaGGGAG--------GGUUCUGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.