miRNA display CGI


Results 41 - 56 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10907 3' -52 NC_002794.1 + 114792 0.68 0.983246
Target:  5'- gCCCAGGU-UGUCUCgcaggUCCCGgAGGCCCGc -3'
miRNA:   3'- -GGGUUUAuGUAGGG-----AGGGU-UCUGGGC- -5'
10907 3' -52 NC_002794.1 + 124145 0.69 0.96207
Target:  5'- gCCCGGGaGCGg-UCUCCgCGGGGCCCGg -3'
miRNA:   3'- -GGGUUUaUGUagGGAGG-GUUCUGGGC- -5'
10907 3' -52 NC_002794.1 + 135448 0.68 0.976744
Target:  5'- aCCCG---ACGgg-CUCCCGGGGCCCGc -3'
miRNA:   3'- -GGGUuuaUGUaggGAGGGUUCUGGGC- -5'
10907 3' -52 NC_002794.1 + 135945 0.67 0.988271
Target:  5'- cUCCAugaaagaggaGAUGgAUUCCUCCuCGAG-CCCGg -3'
miRNA:   3'- -GGGU----------UUAUgUAGGGAGG-GUUCuGGGC- -5'
10907 3' -52 NC_002794.1 + 146013 0.68 0.981253
Target:  5'- gCCGGAgacgcCGUCCCaguccgcucgaUCuCCGGGACCCGu -3'
miRNA:   3'- gGGUUUau---GUAGGG-----------AG-GGUUCUGGGC- -5'
10907 3' -52 NC_002794.1 + 151965 0.71 0.910024
Target:  5'- cCCCGGGUGC-UCCUcggCCCGGGACgUGg -3'
miRNA:   3'- -GGGUUUAUGuAGGGa--GGGUUCUGgGC- -5'
10907 3' -52 NC_002794.1 + 155927 0.66 0.995498
Target:  5'- gCCGGGUGCuugCCgUCaCCGGGGCUCu -3'
miRNA:   3'- gGGUUUAUGua-GGgAG-GGUUCUGGGc -5'
10907 3' -52 NC_002794.1 + 179138 0.67 0.988271
Target:  5'- gUCGAu--CGUCUCUCCCuuaccAGACCUGg -3'
miRNA:   3'- gGGUUuauGUAGGGAGGGu----UCUGGGC- -5'
10907 3' -52 NC_002794.1 + 179386 0.69 0.958132
Target:  5'- gCUCAAAUACAguaacgcgagcggUaaacagaaaaCCCUCCCGGGcCCCGg -3'
miRNA:   3'- -GGGUUUAUGU-------------A----------GGGAGGGUUCuGGGC- -5'
10907 3' -52 NC_002794.1 + 183488 0.69 0.96207
Target:  5'- gCCCGAuccccGCGcgaaCCCggcCCCGAGACCCa -3'
miRNA:   3'- -GGGUUua---UGUa---GGGa--GGGUUCUGGGc -5'
10907 3' -52 NC_002794.1 + 184215 0.66 0.99204
Target:  5'- cCCCGAAccaGC-UCCCggCCCAGuuCCCGg -3'
miRNA:   3'- -GGGUUUa--UGuAGGGa-GGGUUcuGGGC- -5'
10907 3' -52 NC_002794.1 + 187053 0.66 0.995498
Target:  5'- uCCCGGAgcccGCggCCCg-CCAGGugCCGc -3'
miRNA:   3'- -GGGUUUa---UGuaGGGagGGUUCugGGC- -5'
10907 3' -52 NC_002794.1 + 189583 0.74 0.821602
Target:  5'- gCCCGGGccgGCGcCCCUuagcccguccgCCCGAGACCCGc -3'
miRNA:   3'- -GGGUUUa--UGUaGGGA-----------GGGUUCUGGGC- -5'
10907 3' -52 NC_002794.1 + 190893 0.7 0.954709
Target:  5'- cCCCAGGUACAggagaaaccgcgUCUgCUCCCAcuccccGGCCCGc -3'
miRNA:   3'- -GGGUUUAUGU------------AGG-GAGGGUu-----CUGGGC- -5'
10907 3' -52 NC_002794.1 + 191730 0.67 0.986746
Target:  5'- gCCCAcggACGcgaCCUCCgAGGACUCGg -3'
miRNA:   3'- -GGGUuuaUGUag-GGAGGgUUCUGGGC- -5'
10907 3' -52 NC_002794.1 + 193861 0.71 0.927065
Target:  5'- gCCCAcc--CAcCCCUCCCcGGGCCCc -3'
miRNA:   3'- -GGGUuuauGUaGGGAGGGuUCUGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.