miRNA display CGI


Results 41 - 56 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10907 3' -52 NC_002794.1 + 35522 0.77 0.627405
Target:  5'- gCCCAGcgucUACAUCCUgcaCCgCGAGACCCGg -3'
miRNA:   3'- -GGGUUu---AUGUAGGGa--GG-GUUCUGGGC- -5'
10907 3' -52 NC_002794.1 + 34678 0.66 0.994051
Target:  5'- aCC-AGUACGUCaCCUUCCucgucacccgccagcAGGCCCGc -3'
miRNA:   3'- gGGuUUAUGUAG-GGAGGGu--------------UCUGGGC- -5'
10907 3' -52 NC_002794.1 + 30520 0.7 0.937227
Target:  5'- aCCAAGcGCGgcagCCCgcgCuCCAAGACCCu -3'
miRNA:   3'- gGGUUUaUGUa---GGGa--G-GGUUCUGGGc -5'
10907 3' -52 NC_002794.1 + 28287 0.67 0.985074
Target:  5'- aCCCAAcUGauuaggauUCCCUCCCua-ACCCGu -3'
miRNA:   3'- -GGGUUuAUgu------AGGGAGGGuucUGGGC- -5'
10907 3' -52 NC_002794.1 + 23705 0.72 0.869636
Target:  5'- cCCCGAA-GCGUCCCgaaCCGcgcgcggcGGGCCCGa -3'
miRNA:   3'- -GGGUUUaUGUAGGGag-GGU--------UCUGGGC- -5'
10907 3' -52 NC_002794.1 + 21740 0.66 0.993056
Target:  5'- gCCGAagcgGUGCGccUCCCUCCaCGGGAUCg- -3'
miRNA:   3'- gGGUU----UAUGU--AGGGAGG-GUUCUGGgc -5'
10907 3' -52 NC_002794.1 + 19582 0.66 0.994777
Target:  5'- aCCCA-----GUgCCUCCUccGGCCCGg -3'
miRNA:   3'- -GGGUuuaugUAgGGAGGGuuCUGGGC- -5'
10907 3' -52 NC_002794.1 + 19413 0.67 0.985074
Target:  5'- aCCCGGAUcggGCGcgCCCUCcuccgcgaCCAGGcCCCGa -3'
miRNA:   3'- -GGGUUUA---UGUa-GGGAG--------GGUUCuGGGC- -5'
10907 3' -52 NC_002794.1 + 18296 0.7 0.937227
Target:  5'- aCCGA--GCcgCCCUCUCGAGgGCCCu -3'
miRNA:   3'- gGGUUuaUGuaGGGAGGGUUC-UGGGc -5'
10907 3' -52 NC_002794.1 + 17022 0.67 0.990909
Target:  5'- aCCCGGcgGCgGUCCCauggaaCUGAGACCCu -3'
miRNA:   3'- -GGGUUuaUG-UAGGGag----GGUUCUGGGc -5'
10907 3' -52 NC_002794.1 + 12854 0.66 0.99204
Target:  5'- aCCGAGUGgGggaCCaCCUggGACCCGc -3'
miRNA:   3'- gGGUUUAUgUag-GGaGGGuuCUGGGC- -5'
10907 3' -52 NC_002794.1 + 8345 0.69 0.96542
Target:  5'- cCCCAAGUGCAgccccCCCUUCgAAG-CCgGg -3'
miRNA:   3'- -GGGUUUAUGUa----GGGAGGgUUCuGGgC- -5'
10907 3' -52 NC_002794.1 + 8170 0.69 0.96542
Target:  5'- cCCCGGGcccgGCGUCCCgCCCGGuuucccACCCGg -3'
miRNA:   3'- -GGGUUUa---UGUAGGGaGGGUUc-----UGGGC- -5'
10907 3' -52 NC_002794.1 + 7422 1.13 0.00584
Target:  5'- aCCCAAAUACAUCCCUCCCAAGACCCGg -3'
miRNA:   3'- -GGGUUUAUGUAGGGAGGGUUCUGGGC- -5'
10907 3' -52 NC_002794.1 + 6881 0.71 0.903867
Target:  5'- aCCAGA-AgAUCCCcCCCGAGugCCa -3'
miRNA:   3'- gGGUUUaUgUAGGGaGGGUUCugGGc -5'
10907 3' -52 NC_002794.1 + 5425 0.68 0.983246
Target:  5'- aCCGGAagACcuGUCCa-CCCGAGACCCu -3'
miRNA:   3'- gGGUUUa-UG--UAGGgaGGGUUCUGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.