miRNA display CGI


Results 41 - 56 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10907 3' -52 NC_002794.1 + 155927 0.66 0.995498
Target:  5'- gCCGGGUGCuugCCgUCaCCGGGGCUCu -3'
miRNA:   3'- gGGUUUAUGua-GGgAG-GGUUCUGGGc -5'
10907 3' -52 NC_002794.1 + 12854 0.66 0.99204
Target:  5'- aCCGAGUGgGggaCCaCCUggGACCCGc -3'
miRNA:   3'- gGGUUUAUgUag-GGaGGGuuCUGGGC- -5'
10907 3' -52 NC_002794.1 + 76430 0.66 0.993056
Target:  5'- gCCAAGcgcCAUCCUccCCCGAG-CCCGu -3'
miRNA:   3'- gGGUUUau-GUAGGGa-GGGUUCuGGGC- -5'
10907 3' -52 NC_002794.1 + 114792 0.68 0.983246
Target:  5'- gCCCAGGU-UGUCUCgcaggUCCCGgAGGCCCGc -3'
miRNA:   3'- -GGGUUUAuGUAGGG-----AGGGU-UCUGGGC- -5'
10907 3' -52 NC_002794.1 + 80356 0.68 0.983246
Target:  5'- gUCCAAuaagcGCGUCCgggCCCAGGGCCUc -3'
miRNA:   3'- -GGGUUua---UGUAGGga-GGGUUCUGGGc -5'
10907 3' -52 NC_002794.1 + 19413 0.67 0.985074
Target:  5'- aCCCGGAUcggGCGcgCCCUCcuccgcgaCCAGGcCCCGa -3'
miRNA:   3'- -GGGUUUA---UGUa-GGGAG--------GGUUCuGGGC- -5'
10907 3' -52 NC_002794.1 + 67733 0.67 0.986746
Target:  5'- uCCCGGcgGCggCCa-CCCGAG-CCCGg -3'
miRNA:   3'- -GGGUUuaUGuaGGgaGGGUUCuGGGC- -5'
10907 3' -52 NC_002794.1 + 191730 0.67 0.986746
Target:  5'- gCCCAcggACGcgaCCUCCgAGGACUCGg -3'
miRNA:   3'- -GGGUuuaUGUag-GGAGGgUUCUGGGC- -5'
10907 3' -52 NC_002794.1 + 28287 0.67 0.985074
Target:  5'- aCCCAAcUGauuaggauUCCCUCCCua-ACCCGu -3'
miRNA:   3'- -GGGUUuAUgu------AGGGAGGGuucUGGGC- -5'
10907 3' -52 NC_002794.1 + 135945 0.67 0.988271
Target:  5'- cUCCAugaaagaggaGAUGgAUUCCUCCuCGAG-CCCGg -3'
miRNA:   3'- -GGGU----------UUAUgUAGGGAGG-GUUCuGGGC- -5'
10907 3' -52 NC_002794.1 + 179138 0.67 0.988271
Target:  5'- gUCGAu--CGUCUCUCCCuuaccAGACCUGg -3'
miRNA:   3'- gGGUUuauGUAGGGAGGGu----UCUGGGC- -5'
10907 3' -52 NC_002794.1 + 35628 0.67 0.989655
Target:  5'- gCCAc---CAUCUC-CCgCAAGACCCGg -3'
miRNA:   3'- gGGUuuauGUAGGGaGG-GUUCUGGGC- -5'
10907 3' -52 NC_002794.1 + 104436 0.67 0.990909
Target:  5'- gCCCGGAcGCcgCCgCgggcggCCCGAG-CCCGg -3'
miRNA:   3'- -GGGUUUaUGuaGG-Ga-----GGGUUCuGGGC- -5'
10907 3' -52 NC_002794.1 + 17022 0.67 0.990909
Target:  5'- aCCCGGcgGCgGUCCCauggaaCUGAGACCCu -3'
miRNA:   3'- -GGGUUuaUG-UAGGGag----GGUUCUGGGc -5'
10907 3' -52 NC_002794.1 + 72930 0.66 0.99204
Target:  5'- gUCGGAgccgGCGUCCgCgcgCCCAccGGGCCCa -3'
miRNA:   3'- gGGUUUa---UGUAGG-Ga--GGGU--UCUGGGc -5'
10907 3' -52 NC_002794.1 + 43774 0.66 0.995697
Target:  5'- gCCAGAUcucgccgaacgccccGCGUCCgaCCCGccgcuccGGGCCCa -3'
miRNA:   3'- gGGUUUA---------------UGUAGGgaGGGU-------UCUGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.