miRNA display CGI


Results 1 - 20 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10907 5' -62.4 NC_002794.1 + 112617 0.66 0.702066
Target:  5'- cACCUGcgcgucguCCACGGG-CGGCUucucgaGCAGCAGg -3'
miRNA:   3'- -UGGGCc-------GGUGCCCuGUCGG------UGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 94193 0.66 0.702066
Target:  5'- uUCCGGCCaaGCGGuugcgcuuguGACGGUgGCGGCGa -3'
miRNA:   3'- uGGGCCGG--UGCC----------CUGUCGgUGUCGUc -5'
10907 5' -62.4 NC_002794.1 + 143851 0.66 0.702066
Target:  5'- cUCCGGCCA-GGcGAUcGCCGCcGCGGc -3'
miRNA:   3'- uGGGCCGGUgCC-CUGuCGGUGuCGUC- -5'
10907 5' -62.4 NC_002794.1 + 115928 0.66 0.702066
Target:  5'- gGCgCGGCgGCGGGcCGGcCCGCcGCGu -3'
miRNA:   3'- -UGgGCCGgUGCCCuGUC-GGUGuCGUc -5'
10907 5' -62.4 NC_002794.1 + 186880 0.66 0.702066
Target:  5'- gGCUCGGCuCGCGGucCGGCguCcGCAGg -3'
miRNA:   3'- -UGGGCCG-GUGCCcuGUCGguGuCGUC- -5'
10907 5' -62.4 NC_002794.1 + 111321 0.66 0.702066
Target:  5'- cGCCgGGCCAgCGGcGCGgGCCGCAGa-- -3'
miRNA:   3'- -UGGgCCGGU-GCCcUGU-CGGUGUCguc -5'
10907 5' -62.4 NC_002794.1 + 41758 0.66 0.702066
Target:  5'- aGCCCGcuuCCACGGaGAuCAGCC-CGGCc- -3'
miRNA:   3'- -UGGGCc--GGUGCC-CU-GUCGGuGUCGuc -5'
10907 5' -62.4 NC_002794.1 + 151581 0.66 0.702066
Target:  5'- cCCCGGCgGCGcGcGCcGCCGCcGCGGg -3'
miRNA:   3'- uGGGCCGgUGC-CcUGuCGGUGuCGUC- -5'
10907 5' -62.4 NC_002794.1 + 123993 0.66 0.702066
Target:  5'- gGCgCCGGUCaucuacgugaaGCGGG-CGGCCGCGGaAGa -3'
miRNA:   3'- -UG-GGCCGG-----------UGCCCuGUCGGUGUCgUC- -5'
10907 5' -62.4 NC_002794.1 + 45646 0.66 0.701113
Target:  5'- -gUCGGaguggcagaagcuCCGCGGGccgcagaagaGCAGCCAgAGCAGg -3'
miRNA:   3'- ugGGCC-------------GGUGCCC----------UGUCGGUgUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 41219 0.66 0.695387
Target:  5'- -aCCGGCCucCGGGgauuccucccacgccGCGGCCGCcgacgccGGCGGc -3'
miRNA:   3'- ugGGCCGGu-GCCC---------------UGUCGGUG-------UCGUC- -5'
10907 5' -62.4 NC_002794.1 + 126475 0.66 0.692517
Target:  5'- gACCuUGGCCugGGGACuguugGGCUGC-GCGa -3'
miRNA:   3'- -UGG-GCCGGugCCCUG-----UCGGUGuCGUc -5'
10907 5' -62.4 NC_002794.1 + 35990 0.66 0.692517
Target:  5'- gACCCGGUuuuauuguCGCGGGGCucggGCGGCGGa -3'
miRNA:   3'- -UGGGCCG--------GUGCCCUGucggUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 106367 0.66 0.692517
Target:  5'- gGCgCCGGuUCGCGcGGAgGGCagACGGCGGg -3'
miRNA:   3'- -UG-GGCC-GGUGC-CCUgUCGg-UGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 150029 0.66 0.692517
Target:  5'- gACCCGGCCGCcGaGugGaGCCGCuaccgacuGCGGu -3'
miRNA:   3'- -UGGGCCGGUGcC-CugU-CGGUGu-------CGUC- -5'
10907 5' -62.4 NC_002794.1 + 183504 0.66 0.692517
Target:  5'- aACCCGGCCcCGaGACccauGUCGCGGCc- -3'
miRNA:   3'- -UGGGCCGGuGCcCUGu---CGGUGUCGuc -5'
10907 5' -62.4 NC_002794.1 + 56580 0.66 0.692517
Target:  5'- cGCCCGcGCCGCGGcGCccGCCGcCGGCc- -3'
miRNA:   3'- -UGGGC-CGGUGCCcUGu-CGGU-GUCGuc -5'
10907 5' -62.4 NC_002794.1 + 86852 0.66 0.692517
Target:  5'- gGCCCcGCCGggauUGGGuCuGCCGCGGCuAGg -3'
miRNA:   3'- -UGGGcCGGU----GCCCuGuCGGUGUCG-UC- -5'
10907 5' -62.4 NC_002794.1 + 33451 0.66 0.691559
Target:  5'- gACCucgggCGGCCGCcGGACGcgcccacGCCGCuGCAGc -3'
miRNA:   3'- -UGG-----GCCGGUGcCCUGU-------CGGUGuCGUC- -5'
10907 5' -62.4 NC_002794.1 + 54983 0.66 0.682923
Target:  5'- gACCC-GCCGCGGcGACGGCgGCgacucgccgGGCGu -3'
miRNA:   3'- -UGGGcCGGUGCC-CUGUCGgUG---------UCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.