miRNA display CGI


Results 41 - 60 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10907 5' -62.4 NC_002794.1 + 139891 0.66 0.682923
Target:  5'- uCUCGGUgaUGCGGGcCAGCCGCAGg-- -3'
miRNA:   3'- uGGGCCG--GUGCCCuGUCGGUGUCguc -5'
10907 5' -62.4 NC_002794.1 + 54983 0.66 0.682923
Target:  5'- gACCC-GCCGCGGcGACGGCgGCgacucgccgGGCGu -3'
miRNA:   3'- -UGGGcCGGUGCC-CUGUCGgUG---------UCGUc -5'
10907 5' -62.4 NC_002794.1 + 33451 0.66 0.691559
Target:  5'- gACCucgggCGGCCGCcGGACGcgcccacGCCGCuGCAGc -3'
miRNA:   3'- -UGG-----GCCGGUGcCCUGU-------CGGUGuCGUC- -5'
10907 5' -62.4 NC_002794.1 + 65927 0.66 0.682923
Target:  5'- -gCCGGCgGCGGuGGCGuCgGCGGCGGu -3'
miRNA:   3'- ugGGCCGgUGCC-CUGUcGgUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 126475 0.66 0.692517
Target:  5'- gACCuUGGCCugGGGACuguugGGCUGC-GCGa -3'
miRNA:   3'- -UGG-GCCGGugCCCUG-----UCGGUGuCGUc -5'
10907 5' -62.4 NC_002794.1 + 35990 0.66 0.692517
Target:  5'- gACCCGGUuuuauuguCGCGGGGCucggGCGGCGGa -3'
miRNA:   3'- -UGGGCCG--------GUGCCCUGucggUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 106367 0.66 0.692517
Target:  5'- gGCgCCGGuUCGCGcGGAgGGCagACGGCGGg -3'
miRNA:   3'- -UG-GGCC-GGUGC-CCUgUCGg-UGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 150029 0.66 0.692517
Target:  5'- gACCCGGCCGCcGaGugGaGCCGCuaccgacuGCGGu -3'
miRNA:   3'- -UGGGCCGGUGcC-CugU-CGGUGu-------CGUC- -5'
10907 5' -62.4 NC_002794.1 + 183504 0.66 0.692517
Target:  5'- aACCCGGCCcCGaGACccauGUCGCGGCc- -3'
miRNA:   3'- -UGGGCCGGuGCcCUGu---CGGUGUCGuc -5'
10907 5' -62.4 NC_002794.1 + 65220 0.67 0.624824
Target:  5'- cGCUCGcauuCCACGGGcgGCGgucGCCGCGGCGGc -3'
miRNA:   3'- -UGGGCc---GGUGCCC--UGU---CGGUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 16810 0.67 0.624824
Target:  5'- cGCCCaGCCGCccccGCcGCCGCAGCAGc -3'
miRNA:   3'- -UGGGcCGGUGccc-UGuCGGUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 36182 0.67 0.624824
Target:  5'- cGCCCcgGGCCgccagcaugACGuGGcacACGGCCAcCAGCAGg -3'
miRNA:   3'- -UGGG--CCGG---------UGC-CC---UGUCGGU-GUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 117262 0.67 0.624824
Target:  5'- gGCCuCGGCCagacacuccGCGacgcccugcgcGGACAGCUGCGGCGu -3'
miRNA:   3'- -UGG-GCCGG---------UGC-----------CCUGUCGGUGUCGUc -5'
10907 5' -62.4 NC_002794.1 + 72464 0.67 0.633564
Target:  5'- cGCCCGGCCccGCGGcggcgccgaaaaGACgaucacgcagucgGGCaCGCGGCAGc -3'
miRNA:   3'- -UGGGCCGG--UGCC------------CUG-------------UCG-GUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 60589 0.67 0.634535
Target:  5'- cGCCgGGCCugcuggaGGcGCAGCagcaACAGCAGa -3'
miRNA:   3'- -UGGgCCGGug-----CCcUGUCGg---UGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 190962 0.67 0.634535
Target:  5'- cACCaGcGCCuCGGGGCAGCagaGCAGgCAGc -3'
miRNA:   3'- -UGGgC-CGGuGCCCUGUCGg--UGUC-GUC- -5'
10907 5' -62.4 NC_002794.1 + 141593 0.67 0.634535
Target:  5'- cGCCCGcGUCGCcGGGCGGCU-CGGCGa -3'
miRNA:   3'- -UGGGC-CGGUGcCCUGUCGGuGUCGUc -5'
10907 5' -62.4 NC_002794.1 + 129187 0.67 0.634535
Target:  5'- -aUCGGCCucCGGGucgacgaccgaGCGGCCgACGGCGGu -3'
miRNA:   3'- ugGGCCGGu-GCCC-----------UGUCGG-UGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 60637 0.67 0.634535
Target:  5'- gACCCGGCgCcgGCGGcGcCGGCCACccGGCGc -3'
miRNA:   3'- -UGGGCCG-G--UGCC-CuGUCGGUG--UCGUc -5'
10907 5' -62.4 NC_002794.1 + 37746 0.67 0.624824
Target:  5'- -gCCGGCgGCGGcGCGGCgGCgccGGCGGg -3'
miRNA:   3'- ugGGCCGgUGCCcUGUCGgUG---UCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.