miRNA display CGI


Results 61 - 80 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10907 5' -62.4 NC_002794.1 + 113866 0.67 0.605425
Target:  5'- uUCCGGCCA-GGcGcgcuCGGCCGCGGCGc -3'
miRNA:   3'- uGGGCCGGUgCC-Cu---GUCGGUGUCGUc -5'
10907 5' -62.4 NC_002794.1 + 63446 0.67 0.602519
Target:  5'- cACCaCGGCCGCGGcGGCgacgaugacgacgaGGCgGCGGCc- -3'
miRNA:   3'- -UGG-GCCGGUGCC-CUG--------------UCGgUGUCGuc -5'
10907 5' -62.4 NC_002794.1 + 114202 0.67 0.604456
Target:  5'- cGCCaCGGCCGgcgucucCGGcGGCAGCCAgccgauCAGCGc -3'
miRNA:   3'- -UGG-GCCGGU-------GCC-CUGUCGGU------GUCGUc -5'
10907 5' -62.4 NC_002794.1 + 127247 0.67 0.599616
Target:  5'- gGCCaCGGCCACGacgacgaccacgaccGcGACGGUCACGGUg- -3'
miRNA:   3'- -UGG-GCCGGUGC---------------C-CUGUCGGUGUCGuc -5'
10907 5' -62.4 NC_002794.1 + 36838 0.67 0.623853
Target:  5'- cCCCGGaCCgucucguagguguGCGGaGACcGCCACuGCAGc -3'
miRNA:   3'- uGGGCC-GG-------------UGCC-CUGuCGGUGuCGUC- -5'
10907 5' -62.4 NC_002794.1 + 44705 0.67 0.615119
Target:  5'- cGCCCGGCCGCGaccGCGGCgACGuCGGc -3'
miRNA:   3'- -UGGGCCGGUGCcc-UGUCGgUGUcGUC- -5'
10907 5' -62.4 NC_002794.1 + 60637 0.67 0.634535
Target:  5'- gACCCGGCgCcgGCGGcGcCGGCCACccGGCGc -3'
miRNA:   3'- -UGGGCCG-G--UGCC-CuGUCGGUG--UCGUc -5'
10907 5' -62.4 NC_002794.1 + 129187 0.67 0.634535
Target:  5'- -aUCGGCCucCGGGucgacgaccgaGCGGCCgACGGCGGu -3'
miRNA:   3'- ugGGCCGGu-GCCC-----------UGUCGG-UGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 141593 0.67 0.634535
Target:  5'- cGCCCGcGUCGCcGGGCGGCU-CGGCGa -3'
miRNA:   3'- -UGGGC-CGGUGcCCUGUCGGuGUCGUc -5'
10907 5' -62.4 NC_002794.1 + 190962 0.67 0.634535
Target:  5'- cACCaGcGCCuCGGGGCAGCagaGCAGgCAGc -3'
miRNA:   3'- -UGGgC-CGGuGCCCUGUCGg--UGUC-GUC- -5'
10907 5' -62.4 NC_002794.1 + 60589 0.67 0.634535
Target:  5'- cGCCgGGCCugcuggaGGcGCAGCagcaACAGCAGa -3'
miRNA:   3'- -UGGgCCGGug-----CCcUGUCGg---UGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 72464 0.67 0.633564
Target:  5'- cGCCCGGCCccGCGGcggcgccgaaaaGACgaucacgcagucgGGCaCGCGGCAGc -3'
miRNA:   3'- -UGGGCCGG--UGCC------------CUG-------------UCG-GUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 65220 0.67 0.624824
Target:  5'- cGCUCGcauuCCACGGGcgGCGgucGCCGCGGCGGc -3'
miRNA:   3'- -UGGGCc---GGUGCCC--UGU---CGGUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 16810 0.67 0.624824
Target:  5'- cGCCCaGCCGCccccGCcGCCGCAGCAGc -3'
miRNA:   3'- -UGGGcCGGUGccc-UGuCGGUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 36182 0.67 0.624824
Target:  5'- cGCCCcgGGCCgccagcaugACGuGGcacACGGCCAcCAGCAGg -3'
miRNA:   3'- -UGGG--CCGG---------UGC-CC---UGUCGGU-GUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 117262 0.67 0.624824
Target:  5'- gGCCuCGGCCagacacuccGCGacgcccugcgcGGACAGCUGCGGCGu -3'
miRNA:   3'- -UGG-GCCGG---------UGC-----------CCUGUCGGUGUCGUc -5'
10907 5' -62.4 NC_002794.1 + 37746 0.67 0.624824
Target:  5'- -gCCGGCgGCGGcGCGGCgGCgccGGCGGg -3'
miRNA:   3'- ugGGCCGgUGCCcUGUCGgUG---UCGUC- -5'
10907 5' -62.4 NC_002794.1 + 187314 0.67 0.624824
Target:  5'- uACCaC-GUCGCGGGguuccGCAGCCGgAGCAGc -3'
miRNA:   3'- -UGG-GcCGGUGCCC-----UGUCGGUgUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 34992 0.67 0.624824
Target:  5'- uGCgCCGGCUGCGGGccCGGCacuaugUACAGCAa -3'
miRNA:   3'- -UG-GGCCGGUGCCCu-GUCG------GUGUCGUc -5'
10907 5' -62.4 NC_002794.1 + 36358 0.67 0.624824
Target:  5'- uGCgCGGCCAcCGGGugcGCGcCCGCGGCGa -3'
miRNA:   3'- -UGgGCCGGU-GCCC---UGUcGGUGUCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.