miRNA display CGI


Results 81 - 100 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10907 5' -62.4 NC_002794.1 + 117262 0.67 0.624824
Target:  5'- gGCCuCGGCCagacacuccGCGacgcccugcgcGGACAGCUGCGGCGu -3'
miRNA:   3'- -UGG-GCCGG---------UGC-----------CCUGUCGGUGUCGUc -5'
10907 5' -62.4 NC_002794.1 + 186642 0.67 0.615119
Target:  5'- aGCCCG--CGCGGGuCGGCCGCGcGCAc -3'
miRNA:   3'- -UGGGCcgGUGCCCuGUCGGUGU-CGUc -5'
10907 5' -62.4 NC_002794.1 + 14504 0.67 0.621912
Target:  5'- gGCCCGcGCuCGCGGcGCucguggcgccgcucGGCCACGGCGc -3'
miRNA:   3'- -UGGGC-CG-GUGCCcUG--------------UCGGUGUCGUc -5'
10907 5' -62.4 NC_002794.1 + 36838 0.67 0.623853
Target:  5'- cCCCGGaCCgucucguagguguGCGGaGACcGCCACuGCAGc -3'
miRNA:   3'- uGGGCC-GG-------------UGCC-CUGuCGGUGuCGUC- -5'
10907 5' -62.4 NC_002794.1 + 44705 0.67 0.615119
Target:  5'- cGCCCGGCCGCGaccGCGGCgACGuCGGc -3'
miRNA:   3'- -UGGGCCGGUGCcc-UGUCGgUGUcGUC- -5'
10907 5' -62.4 NC_002794.1 + 36358 0.67 0.624824
Target:  5'- uGCgCGGCCAcCGGGugcGCGcCCGCGGCGa -3'
miRNA:   3'- -UGgGCCGGU-GCCC---UGUcGGUGUCGUc -5'
10907 5' -62.4 NC_002794.1 + 34992 0.67 0.624824
Target:  5'- uGCgCCGGCUGCGGGccCGGCacuaugUACAGCAa -3'
miRNA:   3'- -UG-GGCCGGUGCCCu-GUCG------GUGUCGUc -5'
10907 5' -62.4 NC_002794.1 + 187314 0.67 0.624824
Target:  5'- uACCaC-GUCGCGGGguuccGCAGCCGgAGCAGc -3'
miRNA:   3'- -UGG-GcCGGUGCCC-----UGUCGGUgUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 37746 0.67 0.624824
Target:  5'- -gCCGGCgGCGGcGCGGCgGCgccGGCGGg -3'
miRNA:   3'- ugGGCCGgUGCCcUGUCGgUG---UCGUC- -5'
10907 5' -62.4 NC_002794.1 + 142902 0.68 0.557341
Target:  5'- uGCCCGGCguccucCGGG--GGCCGgAGCAGg -3'
miRNA:   3'- -UGGGCCGgu----GCCCugUCGGUgUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 181159 0.68 0.557341
Target:  5'- aGCCCGuccGCCGCGccGACGGCgaACGGCGGa -3'
miRNA:   3'- -UGGGC---CGGUGCc-CUGUCGg-UGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 21756 0.68 0.557341
Target:  5'- uCCCu-CCACGGGAUcgagaAGCCACGGCu- -3'
miRNA:   3'- uGGGccGGUGCCCUG-----UCGGUGUCGuc -5'
10907 5' -62.4 NC_002794.1 + 20979 0.68 0.557341
Target:  5'- -aCCGGCagcgGCGGcGGCAGCgacCGCGGCGGc -3'
miRNA:   3'- ugGGCCGg---UGCC-CUGUCG---GUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 190928 0.68 0.557341
Target:  5'- cCCCGGCCcgcagcCGGuagcACGGCCcCAGCAGc -3'
miRNA:   3'- uGGGCCGGu-----GCCc---UGUCGGuGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 12395 0.68 0.56593
Target:  5'- cGCCUGGCCgacaaccgcACGcGGACGGCgCGCgccgacuGGCAGc -3'
miRNA:   3'- -UGGGCCGG---------UGC-CCUGUCG-GUG-------UCGUC- -5'
10907 5' -62.4 NC_002794.1 + 67726 0.68 0.566887
Target:  5'- gGCUCGGUCcCGGcGGCGGCCACccgAGCc- -3'
miRNA:   3'- -UGGGCCGGuGCC-CUGUCGGUG---UCGuc -5'
10907 5' -62.4 NC_002794.1 + 71413 0.68 0.566887
Target:  5'- -gCCGGCCgucguccaGCGuGGACucguaGGCCGcCAGCAGa -3'
miRNA:   3'- ugGGCCGG--------UGC-CCUG-----UCGGU-GUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 148130 0.68 0.566887
Target:  5'- -gUCGGgCGCGGGGCcGCCGgGGCGa -3'
miRNA:   3'- ugGGCCgGUGCCCUGuCGGUgUCGUc -5'
10907 5' -62.4 NC_002794.1 + 123680 0.68 0.576474
Target:  5'- gGCCCGGgCugGGaGCAGgCGCgacuGGCGGg -3'
miRNA:   3'- -UGGGCCgGugCCcUGUCgGUG----UCGUC- -5'
10907 5' -62.4 NC_002794.1 + 55920 0.68 0.557341
Target:  5'- uCUCGGgCACGGucaggaagcGGCAgagguGCCGCAGCAGg -3'
miRNA:   3'- uGGGCCgGUGCC---------CUGU-----CGGUGUCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.