Results 41 - 60 of 202 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10907 | 5' | -62.4 | NC_002794.1 | + | 156409 | 0.72 | 0.322375 |
Target: 5'- cGCCgCGGCCGCGGccACGGCCgGCGGguGa -3' miRNA: 3'- -UGG-GCCGGUGCCc-UGUCGG-UGUCguC- -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 53768 | 0.72 | 0.329392 |
Target: 5'- -gCCGGCgGCGGGACGcccgcgacgcGCC-CGGCGGg -3' miRNA: 3'- ugGGCCGgUGCCCUGU----------CGGuGUCGUC- -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 95826 | 0.71 | 0.366154 |
Target: 5'- --gCGGCCGgGGGAgCGGCgGCGGCGGc -3' miRNA: 3'- uggGCCGGUgCCCU-GUCGgUGUCGUC- -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 88969 | 0.71 | 0.38163 |
Target: 5'- aGCgUGGCCGCcGGAUcGUCGCGGCAGa -3' miRNA: 3'- -UGgGCCGGUGcCCUGuCGGUGUCGUC- -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 194505 | 0.71 | 0.38953 |
Target: 5'- cGCCCGGcCCGCGGcccgcgugccGcCGGCC-CAGCAGc -3' miRNA: 3'- -UGGGCC-GGUGCC----------CuGUCGGuGUCGUC- -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 74080 | 0.71 | 0.373838 |
Target: 5'- gGCCCuccucGCCGaguCGGGACAGCUGCGGCu- -3' miRNA: 3'- -UGGGc----CGGU---GCCCUGUCGGUGUCGuc -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 114694 | 0.71 | 0.366154 |
Target: 5'- gGCCCGGaCCuccuGCGagacGGACGGCgGCGGCGGc -3' miRNA: 3'- -UGGGCC-GG----UGC----CCUGUCGgUGUCGUC- -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 123360 | 0.71 | 0.38953 |
Target: 5'- -aCCGGCCGCucuGcGugGGCUACAGCGGu -3' miRNA: 3'- ugGGCCGGUGc--C-CugUCGGUGUCGUC- -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 132 | 0.71 | 0.38163 |
Target: 5'- gACCgGaGCC-CGGGACcGCCGCAGgGGc -3' miRNA: 3'- -UGGgC-CGGuGCCCUGuCGGUGUCgUC- -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 112824 | 0.7 | 0.464325 |
Target: 5'- uGCUCGGCCgccgaguACGGcugcucgucGGCGcGCCGCAGCAGc -3' miRNA: 3'- -UGGGCCGG-------UGCC---------CUGU-CGGUGUCGUC- -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 120973 | 0.7 | 0.419672 |
Target: 5'- gGCCCGGCCugcgaguucguguaGCGGcGGCGgGCCAUGGCc- -3' miRNA: 3'- -UGGGCCGG--------------UGCC-CUGU-CGGUGUCGuc -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 119693 | 0.7 | 0.430593 |
Target: 5'- cUCCGGCUGCuGGGccgGCGGCCACaacGGCGGc -3' miRNA: 3'- uGGGCCGGUG-CCC---UGUCGGUG---UCGUC- -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 56261 | 0.7 | 0.439106 |
Target: 5'- gGCaCGGCCAcCGGGccgaGCAGCagGCGGCAGa -3' miRNA: 3'- -UGgGCCGGU-GCCC----UGUCGg-UGUCGUC- -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 194118 | 0.7 | 0.430593 |
Target: 5'- gGCaCCGcGCgCACGGcugaggcaGCGGCCGCAGCAGc -3' miRNA: 3'- -UG-GGC-CG-GUGCCc-------UGUCGGUGUCGUC- -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 179677 | 0.7 | 0.430593 |
Target: 5'- cACCC-GCgGCGGcGACGGUgGCGGCGGc -3' miRNA: 3'- -UGGGcCGgUGCC-CUGUCGgUGUCGUC- -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 32869 | 0.7 | 0.439106 |
Target: 5'- -gCCGGCgGgCGGcGGCGGCgGCGGCGGc -3' miRNA: 3'- ugGGCCGgU-GCC-CUGUCGgUGUCGUC- -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 82029 | 0.7 | 0.447715 |
Target: 5'- aACCCGacgaUCGCGuGGGCGGCgGCGGCGGc -3' miRNA: 3'- -UGGGCc---GGUGC-CCUGUCGgUGUCGUC- -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 48633 | 0.7 | 0.447715 |
Target: 5'- --gCGGCCGuCGGGGCccgcgAGCCGCcGCAGa -3' miRNA: 3'- uggGCCGGU-GCCCUG-----UCGGUGuCGUC- -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 58066 | 0.7 | 0.455543 |
Target: 5'- cCCCGGCgGCGgcgggacGGGCGGCC-CGGCGc -3' miRNA: 3'- uGGGCCGgUGC-------CCUGUCGGuGUCGUc -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 34712 | 0.7 | 0.456417 |
Target: 5'- gGCCCGccggcGCCACGaggcgcGGGCGGCCGCAGa-- -3' miRNA: 3'- -UGGGC-----CGGUGC------CCUGUCGGUGUCguc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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