miRNA display CGI


Results 61 - 80 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10907 5' -62.4 NC_002794.1 + 112824 0.7 0.464325
Target:  5'- uGCUCGGCCgccgaguACGGcugcucgucGGCGcGCCGCAGCAGc -3'
miRNA:   3'- -UGGGCCGG-------UGCC---------CUGU-CGGUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 179677 0.7 0.430593
Target:  5'- cACCC-GCgGCGGcGACGGUgGCGGCGGc -3'
miRNA:   3'- -UGGGcCGgUGCC-CUGUCGgUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 119693 0.7 0.430593
Target:  5'- cUCCGGCUGCuGGGccgGCGGCCACaacGGCGGc -3'
miRNA:   3'- uGGGCCGGUG-CCC---UGUCGGUG---UCGUC- -5'
10907 5' -62.4 NC_002794.1 + 58066 0.7 0.455543
Target:  5'- cCCCGGCgGCGgcgggacGGGCGGCC-CGGCGc -3'
miRNA:   3'- uGGGCCGgUGC-------CCUGUCGGuGUCGUc -5'
10907 5' -62.4 NC_002794.1 + 48633 0.7 0.447715
Target:  5'- --gCGGCCGuCGGGGCccgcgAGCCGCcGCAGa -3'
miRNA:   3'- uggGCCGGU-GCCCUG-----UCGGUGuCGUC- -5'
10907 5' -62.4 NC_002794.1 + 134167 0.7 0.422177
Target:  5'- gGCCgUGGCCGCGcGGAUGGCCACcucguaucggcuGGUGGg -3'
miRNA:   3'- -UGG-GCCGGUGC-CCUGUCGGUG------------UCGUC- -5'
10907 5' -62.4 NC_002794.1 + 32869 0.7 0.439106
Target:  5'- -gCCGGCgGgCGGcGGCGGCgGCGGCGGc -3'
miRNA:   3'- ugGGCCGgU-GCC-CUGUCGgUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 145114 0.69 0.51041
Target:  5'- uACgCGGUguCGGGGCAGCUcauGCuGCGGg -3'
miRNA:   3'- -UGgGCCGguGCCCUGUCGG---UGuCGUC- -5'
10907 5' -62.4 NC_002794.1 + 14638 0.69 0.501215
Target:  5'- -gCCGGgCACGGaGACGccggcGCCGCGGCGu -3'
miRNA:   3'- ugGGCCgGUGCC-CUGU-----CGGUGUCGUc -5'
10907 5' -62.4 NC_002794.1 + 69192 0.69 0.51041
Target:  5'- uUCCGGCaCGCGGcccGCAGCUuggcCAGCAGa -3'
miRNA:   3'- uGGGCCG-GUGCCc--UGUCGGu---GUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 120050 0.69 0.51041
Target:  5'- --aCGGCgGCGGuGGCGGCCGCGG-AGg -3'
miRNA:   3'- uggGCCGgUGCC-CUGUCGGUGUCgUC- -5'
10907 5' -62.4 NC_002794.1 + 17679 0.69 0.501215
Target:  5'- -gCCGGCCccgGCGGaGACcgAGCCGCAcacGCAGu -3'
miRNA:   3'- ugGGCCGG---UGCC-CUG--UCGGUGU---CGUC- -5'
10907 5' -62.4 NC_002794.1 + 47331 0.69 0.519674
Target:  5'- uGCCCGGCUcccGCGGcGGCGGCCucCGGaCGu -3'
miRNA:   3'- -UGGGCCGG---UGCC-CUGUCGGu-GUC-GUc -5'
10907 5' -62.4 NC_002794.1 + 75370 0.69 0.492094
Target:  5'- gACCC-GCCGCGGccGGCGGCgGCGGCc- -3'
miRNA:   3'- -UGGGcCGGUGCC--CUGUCGgUGUCGuc -5'
10907 5' -62.4 NC_002794.1 + 19440 0.69 0.501215
Target:  5'- gACCaGGCCccgaGCGGGcacgagcgGCGGCgGCGGCGGg -3'
miRNA:   3'- -UGGgCCGG----UGCCC--------UGUCGgUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 13813 0.69 0.51041
Target:  5'- gGCCCGGCCgGCGGcGACGGCCu------ -3'
miRNA:   3'- -UGGGCCGG-UGCC-CUGUCGGugucguc -5'
10907 5' -62.4 NC_002794.1 + 154346 0.69 0.519674
Target:  5'- uGCCgCGGCCgagcucccgcGCGGucCAgGCCGCGGCGGc -3'
miRNA:   3'- -UGG-GCCGG----------UGCCcuGU-CGGUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 70655 0.69 0.51041
Target:  5'- uCuuGGCCucgugcGCGGcGGCcGCCGCGGCGGu -3'
miRNA:   3'- uGggCCGG------UGCC-CUGuCGGUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 66714 0.69 0.516888
Target:  5'- cGCCCGG-CACGGccgccgccaccgccGGCGGUgGCGGCGGc -3'
miRNA:   3'- -UGGGCCgGUGCC--------------CUGUCGgUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 187482 0.69 0.519674
Target:  5'- cGCCgGGCCGa-GGACgaGGCCGC-GCAGg -3'
miRNA:   3'- -UGGgCCGGUgcCCUG--UCGGUGuCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.