miRNA display CGI


Results 1 - 20 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10907 5' -62.4 NC_002794.1 + 7456 1.07 0.001299
Target:  5'- gACCCGGCCACGGGACAGCCACAGCAGu -3'
miRNA:   3'- -UGGGCCGGUGCCCUGUCGGUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 193062 0.88 0.031199
Target:  5'- cGCaCCGGCUgcgggccgucGCGGGACAGCCGCAGCAGc -3'
miRNA:   3'- -UG-GGCCGG----------UGCCCUGUCGGUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 180009 0.84 0.055078
Target:  5'- gGCCCGGCCACGacGACGGCCGCGGCc- -3'
miRNA:   3'- -UGGGCCGGUGCc-CUGUCGGUGUCGuc -5'
10907 5' -62.4 NC_002794.1 + 114941 0.79 0.117566
Target:  5'- uCCCGGUCACgaucugguuguGGGACcGCCGCAGCAGc -3'
miRNA:   3'- uGGGCCGGUG-----------CCCUGuCGGUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 184596 0.79 0.126303
Target:  5'- cGCgCGGCCGCGGGAucggcaaCGGCCAgCGGCAGc -3'
miRNA:   3'- -UGgGCCGGUGCCCU-------GUCGGU-GUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 70057 0.79 0.129772
Target:  5'- cGCCCGGUCGgGcGGccGCAGCCGCAGCAa -3'
miRNA:   3'- -UGGGCCGGUgC-CC--UGUCGGUGUCGUc -5'
10907 5' -62.4 NC_002794.1 + 182208 0.79 0.129772
Target:  5'- gGCgUCGcGCCACGGGGCuccgacggucaGGCCGCAGCAGg -3'
miRNA:   3'- -UG-GGC-CGGUGCCCUG-----------UCGGUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 125745 0.77 0.177912
Target:  5'- -gCgGGCCGCGGGACGGCgGcCGGCGGc -3'
miRNA:   3'- ugGgCCGGUGCCCUGUCGgU-GUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 104462 0.77 0.177912
Target:  5'- aGCCCgGGCgGCGugugcaggaugcGGGCGGCCACGGCGGc -3'
miRNA:   3'- -UGGG-CCGgUGC------------CCUGUCGGUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 49399 0.76 0.191079
Target:  5'- cGCCguCGGCCACGG--CGGCCGCGGCGGc -3'
miRNA:   3'- -UGG--GCCGGUGCCcuGUCGGUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 185549 0.76 0.191079
Target:  5'- cACCCGGCCGCGcGccccGCccuGCCGCGGCAGg -3'
miRNA:   3'- -UGGGCCGGUGC-Cc---UGu--CGGUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 103461 0.76 0.200325
Target:  5'- -gCUGGUUGauGGACAGCCGCAGCAGg -3'
miRNA:   3'- ugGGCCGGUgcCCUGUCGGUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 52771 0.76 0.205093
Target:  5'- gGCCCgGGCCGCGGGAUcgugacgcucgAGCCGCucgucggacgccGGCAGc -3'
miRNA:   3'- -UGGG-CCGGUGCCCUG-----------UCGGUG------------UCGUC- -5'
10907 5' -62.4 NC_002794.1 + 21881 0.75 0.219477
Target:  5'- -gCCGGCCGCGGGguguccGCGGCCugcgucgguggugGCGGCGGa -3'
miRNA:   3'- ugGGCCGGUGCCC------UGUCGG-------------UGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 111611 0.75 0.241275
Target:  5'- uCCCaGGCCgGCGGGGCcGCCGCGGCc- -3'
miRNA:   3'- uGGG-CCGG-UGCCCUGuCGGUGUCGuc -5'
10907 5' -62.4 NC_002794.1 + 79431 0.74 0.246858
Target:  5'- gGCCCGGCgGCGGcGGCGGCgACcggcGCGGa -3'
miRNA:   3'- -UGGGCCGgUGCC-CUGUCGgUGu---CGUC- -5'
10907 5' -62.4 NC_002794.1 + 91980 0.74 0.264251
Target:  5'- cGCCUGGCCaucuacaacACGGGGCAGaaCgGCGGCAGc -3'
miRNA:   3'- -UGGGCCGG---------UGCCCUGUC--GgUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 130665 0.74 0.264251
Target:  5'- -gCCGGCCGCGGG-CuccGCCGCGGCc- -3'
miRNA:   3'- ugGGCCGGUGCCCuGu--CGGUGUCGuc -5'
10907 5' -62.4 NC_002794.1 + 48075 0.74 0.264251
Target:  5'- -gCCGGCCAgCGGGAgCAGCCGCcGCu- -3'
miRNA:   3'- ugGGCCGGU-GCCCU-GUCGGUGuCGuc -5'
10907 5' -62.4 NC_002794.1 + 23943 0.74 0.270266
Target:  5'- aGCCCGGCCGCGGcGCacuuggcuccgAGCCAgCGGCGa -3'
miRNA:   3'- -UGGGCCGGUGCCcUG-----------UCGGU-GUCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.