miRNA display CGI


Results 21 - 40 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10907 5' -62.4 NC_002794.1 + 143270 0.74 0.27639
Target:  5'- gGCCCGGCC-CGGcGcCGGCCGCucggggucgGGCGGg -3'
miRNA:   3'- -UGGGCCGGuGCC-CuGUCGGUG---------UCGUC- -5'
10907 5' -62.4 NC_002794.1 + 36754 0.73 0.282625
Target:  5'- uCCCGGuCCugGcGGACGGCCACccAGCu- -3'
miRNA:   3'- uGGGCC-GGugC-CCUGUCGGUG--UCGuc -5'
10907 5' -62.4 NC_002794.1 + 191656 0.73 0.295427
Target:  5'- aGCCC-GCCGgGGGACGGCgCcgGCAGCGGc -3'
miRNA:   3'- -UGGGcCGGUgCCCUGUCG-G--UGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 49011 0.73 0.301996
Target:  5'- uCCCGcGCCGCGG--CGGCCGCGGCGu -3'
miRNA:   3'- uGGGC-CGGUGCCcuGUCGGUGUCGUc -5'
10907 5' -62.4 NC_002794.1 + 40329 0.73 0.301996
Target:  5'- cACCC-GCCGCGcGGACGcGCCACcGGCGGc -3'
miRNA:   3'- -UGGGcCGGUGC-CCUGU-CGGUG-UCGUC- -5'
10907 5' -62.4 NC_002794.1 + 185457 0.73 0.301996
Target:  5'- cUCCGcgacaaacGCCGCGGGcgGCGGCCGCGGCGa -3'
miRNA:   3'- uGGGC--------CGGUGCCC--UGUCGGUGUCGUc -5'
10907 5' -62.4 NC_002794.1 + 129927 0.73 0.301996
Target:  5'- cGCCaGGCCGUGGcGACGGCgGCGGCGGc -3'
miRNA:   3'- -UGGgCCGGUGCC-CUGUCGgUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 553 0.73 0.308677
Target:  5'- uGCCCGGCCuCGGcGCGGCgGUGGCAGg -3'
miRNA:   3'- -UGGGCCGGuGCCcUGUCGgUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 127174 0.73 0.31138
Target:  5'- cACCCucgccgcagucgucGCCGCGGccGCAGCCGCAGCAGc -3'
miRNA:   3'- -UGGGc-------------CGGUGCCc-UGUCGGUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 12094 0.73 0.31547
Target:  5'- gACCUGGaCCgACGGGAC-GCCGUGGCAGa -3'
miRNA:   3'- -UGGGCC-GG-UGCCCUGuCGGUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 138747 0.73 0.31547
Target:  5'- cCCCGGCCcuccgGGGGCcgAGUCGCGGCGGu -3'
miRNA:   3'- uGGGCCGGug---CCCUG--UCGGUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 149692 0.73 0.31547
Target:  5'- -aCUGGCCGCGGG--GGCCGCcuGGCGGg -3'
miRNA:   3'- ugGGCCGGUGCCCugUCGGUG--UCGUC- -5'
10907 5' -62.4 NC_002794.1 + 156409 0.72 0.322375
Target:  5'- cGCCgCGGCCGCGGccACGGCCgGCGGguGa -3'
miRNA:   3'- -UGG-GCCGGUGCCc-UGUCGG-UGUCguC- -5'
10907 5' -62.4 NC_002794.1 + 80407 0.72 0.328685
Target:  5'- cGCCgCGGCCcagguggcgccggGCGGGGCcGCCGcCGGCGGc -3'
miRNA:   3'- -UGG-GCCGG-------------UGCCCUGuCGGU-GUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 188249 0.72 0.329392
Target:  5'- -aCCGGCgGCGGcGGCGGUaGCGGCGGg -3'
miRNA:   3'- ugGGCCGgUGCC-CUGUCGgUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 53768 0.72 0.329392
Target:  5'- -gCCGGCgGCGGGACGcccgcgacgcGCC-CGGCGGg -3'
miRNA:   3'- ugGGCCGgUGCCCUGU----------CGGuGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 180896 0.72 0.336522
Target:  5'- uCUCGGCCGCGGacuCGGCCGCGGUc- -3'
miRNA:   3'- uGGGCCGGUGCCcu-GUCGGUGUCGuc -5'
10907 5' -62.4 NC_002794.1 + 101036 0.72 0.336522
Target:  5'- -gCCGGgCGCGGGuCGGCCGCuacugcguGCAGg -3'
miRNA:   3'- ugGGCCgGUGCCCuGUCGGUGu-------CGUC- -5'
10907 5' -62.4 NC_002794.1 + 93827 0.72 0.336522
Target:  5'- aGCUggCGGCCAuCGccgagaucauGGACGGCCGCGGCGGc -3'
miRNA:   3'- -UGG--GCCGGU-GC----------CCUGUCGGUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 54853 0.72 0.336522
Target:  5'- cGCCCguaGGCCgGCGcGGGCcGCCGCAGCGu -3'
miRNA:   3'- -UGGG---CCGG-UGC-CCUGuCGGUGUCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.