miRNA display CGI


Results 41 - 60 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10907 5' -62.4 NC_002794.1 + 116126 0.72 0.343763
Target:  5'- gUCC-GCCGCGGcGGCGGCgGCGGCGGc -3'
miRNA:   3'- uGGGcCGGUGCC-CUGUCGgUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 181384 0.72 0.343763
Target:  5'- gGCCCGGCCGucaguucgccCGGGcCGGCCGCcGCc- -3'
miRNA:   3'- -UGGGCCGGU----------GCCCuGUCGGUGuCGuc -5'
10907 5' -62.4 NC_002794.1 + 114694 0.71 0.366154
Target:  5'- gGCCCGGaCCuccuGCGagacGGACGGCgGCGGCGGc -3'
miRNA:   3'- -UGGGCC-GG----UGC----CCUGUCGgUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 95826 0.71 0.366154
Target:  5'- --gCGGCCGgGGGAgCGGCgGCGGCGGc -3'
miRNA:   3'- uggGCCGGUgCCCU-GUCGgUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 74080 0.71 0.373838
Target:  5'- gGCCCuccucGCCGaguCGGGACAGCUGCGGCu- -3'
miRNA:   3'- -UGGGc----CGGU---GCCCUGUCGGUGUCGuc -5'
10907 5' -62.4 NC_002794.1 + 88969 0.71 0.38163
Target:  5'- aGCgUGGCCGCcGGAUcGUCGCGGCAGa -3'
miRNA:   3'- -UGgGCCGGUGcCCUGuCGGUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 132 0.71 0.38163
Target:  5'- gACCgGaGCC-CGGGACcGCCGCAGgGGc -3'
miRNA:   3'- -UGGgC-CGGuGCCCUGuCGGUGUCgUC- -5'
10907 5' -62.4 NC_002794.1 + 194505 0.71 0.38953
Target:  5'- cGCCCGGcCCGCGGcccgcgugccGcCGGCC-CAGCAGc -3'
miRNA:   3'- -UGGGCC-GGUGCC----------CuGUCGGuGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 123360 0.71 0.38953
Target:  5'- -aCCGGCCGCucuGcGugGGCUACAGCGGu -3'
miRNA:   3'- ugGGCCGGUGc--C-CugUCGGUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 128665 0.7 0.413861
Target:  5'- -aCCGGCCGCGcGAauaaucGCCGCGGCGGu -3'
miRNA:   3'- ugGGCCGGUGCcCUgu----CGGUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 120973 0.7 0.419672
Target:  5'- gGCCCGGCCugcgaguucguguaGCGGcGGCGgGCCAUGGCc- -3'
miRNA:   3'- -UGGGCCGG--------------UGCC-CUGU-CGGUGUCGuc -5'
10907 5' -62.4 NC_002794.1 + 110633 0.7 0.419672
Target:  5'- cGCCgCGGCgGCGGGgucggguuucuccgGCGGCUGCAGaCAGu -3'
miRNA:   3'- -UGG-GCCGgUGCCC--------------UGUCGGUGUC-GUC- -5'
10907 5' -62.4 NC_002794.1 + 134167 0.7 0.422177
Target:  5'- gGCCgUGGCCGCGcGGAUGGCCACcucguaucggcuGGUGGg -3'
miRNA:   3'- -UGG-GCCGGUGC-CCUGUCGGUG------------UCGUC- -5'
10907 5' -62.4 NC_002794.1 + 83029 0.7 0.422177
Target:  5'- uCCCGGCgC-CGGGcgGCAcCCACGGCGGa -3'
miRNA:   3'- uGGGCCG-GuGCCC--UGUcGGUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 194118 0.7 0.430593
Target:  5'- gGCaCCGcGCgCACGGcugaggcaGCGGCCGCAGCAGc -3'
miRNA:   3'- -UG-GGC-CG-GUGCCc-------UGUCGGUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 179677 0.7 0.430593
Target:  5'- cACCC-GCgGCGGcGACGGUgGCGGCGGc -3'
miRNA:   3'- -UGGGcCGgUGCC-CUGUCGgUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 119693 0.7 0.430593
Target:  5'- cUCCGGCUGCuGGGccgGCGGCCACaacGGCGGc -3'
miRNA:   3'- uGGGCCGGUG-CCC---UGUCGGUG---UCGUC- -5'
10907 5' -62.4 NC_002794.1 + 32869 0.7 0.439106
Target:  5'- -gCCGGCgGgCGGcGGCGGCgGCGGCGGc -3'
miRNA:   3'- ugGGCCGgU-GCC-CUGUCGgUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 115396 0.7 0.439106
Target:  5'- gGCCCGuGCUGCGGacucCAGUgGCGGCAGa -3'
miRNA:   3'- -UGGGC-CGGUGCCcu--GUCGgUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 56261 0.7 0.439106
Target:  5'- gGCaCGGCCAcCGGGccgaGCAGCagGCGGCAGa -3'
miRNA:   3'- -UGgGCCGGU-GCCC----UGUCGg-UGUCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.