miRNA display CGI


Results 61 - 80 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10907 5' -62.4 NC_002794.1 + 82029 0.7 0.447715
Target:  5'- aACCCGacgaUCGCGuGGGCGGCgGCGGCGGc -3'
miRNA:   3'- -UGGGCc---GGUGC-CCUGUCGgUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 48633 0.7 0.447715
Target:  5'- --gCGGCCGuCGGGGCccgcgAGCCGCcGCAGa -3'
miRNA:   3'- uggGCCGGU-GCCCUG-----UCGGUGuCGUC- -5'
10907 5' -62.4 NC_002794.1 + 58066 0.7 0.455543
Target:  5'- cCCCGGCgGCGgcgggacGGGCGGCC-CGGCGc -3'
miRNA:   3'- uGGGCCGgUGC-------CCUGUCGGuGUCGUc -5'
10907 5' -62.4 NC_002794.1 + 34712 0.7 0.456417
Target:  5'- gGCCCGccggcGCCACGaggcgcGGGCGGCCGCAGa-- -3'
miRNA:   3'- -UGGGC-----CGGUGC------CCUGUCGGUGUCguc -5'
10907 5' -62.4 NC_002794.1 + 71224 0.7 0.456417
Target:  5'- uCCCGGCCGCGuaguGGCGGCCGgcguggacCGGCAc -3'
miRNA:   3'- uGGGCCGGUGCc---CUGUCGGU--------GUCGUc -5'
10907 5' -62.4 NC_002794.1 + 112824 0.7 0.464325
Target:  5'- uGCUCGGCCgccgaguACGGcugcucgucGGCGcGCCGCAGCAGc -3'
miRNA:   3'- -UGGGCCGG-------UGCC---------CUGU-CGGUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 115573 0.7 0.465208
Target:  5'- aGCUCGGCgaACGGGACguAGCgGCuGCGGu -3'
miRNA:   3'- -UGGGCCGg-UGCCCUG--UCGgUGuCGUC- -5'
10907 5' -62.4 NC_002794.1 + 184960 0.69 0.474087
Target:  5'- gGCCCGcgcaGCCGCucgucGGGCAGCaCGCAGCGc -3'
miRNA:   3'- -UGGGC----CGGUGc----CCUGUCG-GUGUCGUc -5'
10907 5' -62.4 NC_002794.1 + 184048 0.69 0.474087
Target:  5'- cGCgCGGUCGCGGGccGCGGCgaaGCGGCAc -3'
miRNA:   3'- -UGgGCCGGUGCCC--UGUCGg--UGUCGUc -5'
10907 5' -62.4 NC_002794.1 + 67929 0.69 0.474087
Target:  5'- cCCCGaGCgACGGGGCgauGGCCucgaccgaggACGGCGGg -3'
miRNA:   3'- uGGGC-CGgUGCCCUG---UCGG----------UGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 70859 0.69 0.48215
Target:  5'- -gCCGGCCuccuccgGCGGcGGCAGCgGCGGCu- -3'
miRNA:   3'- ugGGCCGG-------UGCC-CUGUCGgUGUCGuc -5'
10907 5' -62.4 NC_002794.1 + 146996 0.69 0.48215
Target:  5'- -gCCGGCCgacgucgGCGGcGGCGGCCGcCGGCGc -3'
miRNA:   3'- ugGGCCGG-------UGCC-CUGUCGGU-GUCGUc -5'
10907 5' -62.4 NC_002794.1 + 70218 0.69 0.483051
Target:  5'- cGCCCGGaCgGuCGGGcggGCGGCCggccgccccGCAGCAGa -3'
miRNA:   3'- -UGGGCC-GgU-GCCC---UGUCGG---------UGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 186841 0.69 0.483051
Target:  5'- cGCCCGacaGCgCGCGGGcgcugccguGCAGCaGCAGCGGg -3'
miRNA:   3'- -UGGGC---CG-GUGCCC---------UGUCGgUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 75370 0.69 0.492094
Target:  5'- gACCC-GCCGCGGccGGCGGCgGCGGCc- -3'
miRNA:   3'- -UGGGcCGGUGCC--CUGUCGgUGUCGuc -5'
10907 5' -62.4 NC_002794.1 + 14638 0.69 0.501215
Target:  5'- -gCCGGgCACGGaGACGccggcGCCGCGGCGu -3'
miRNA:   3'- ugGGCCgGUGCC-CUGU-----CGGUGUCGUc -5'
10907 5' -62.4 NC_002794.1 + 19440 0.69 0.501215
Target:  5'- gACCaGGCCccgaGCGGGcacgagcgGCGGCgGCGGCGGg -3'
miRNA:   3'- -UGGgCCGG----UGCCC--------UGUCGgUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 17679 0.69 0.501215
Target:  5'- -gCCGGCCccgGCGGaGACcgAGCCGCAcacGCAGu -3'
miRNA:   3'- ugGGCCGG---UGCC-CUG--UCGGUGU---CGUC- -5'
10907 5' -62.4 NC_002794.1 + 70655 0.69 0.51041
Target:  5'- uCuuGGCCucgugcGCGGcGGCcGCCGCGGCGGu -3'
miRNA:   3'- uGggCCGG------UGCC-CUGuCGGUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 145114 0.69 0.51041
Target:  5'- uACgCGGUguCGGGGCAGCUcauGCuGCGGg -3'
miRNA:   3'- -UGgGCCGguGCCCUGUCGG---UGuCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.