miRNA display CGI


Results 81 - 100 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10907 5' -62.4 NC_002794.1 + 69192 0.69 0.51041
Target:  5'- uUCCGGCaCGCGGcccGCAGCUuggcCAGCAGa -3'
miRNA:   3'- uGGGCCG-GUGCCc--UGUCGGu---GUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 145114 0.69 0.51041
Target:  5'- uACgCGGUguCGGGGCAGCUcauGCuGCGGg -3'
miRNA:   3'- -UGgGCCGguGCCCUGUCGG---UGuCGUC- -5'
10907 5' -62.4 NC_002794.1 + 13813 0.69 0.51041
Target:  5'- gGCCCGGCCgGCGGcGACGGCCu------ -3'
miRNA:   3'- -UGGGCCGG-UGCC-CUGUCGGugucguc -5'
10907 5' -62.4 NC_002794.1 + 70655 0.69 0.51041
Target:  5'- uCuuGGCCucgugcGCGGcGGCcGCCGCGGCGGu -3'
miRNA:   3'- uGggCCGG------UGCC-CUGuCGGUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 66714 0.69 0.516888
Target:  5'- cGCCCGG-CACGGccgccgccaccgccGGCGGUgGCGGCGGc -3'
miRNA:   3'- -UGGGCCgGUGCC--------------CUGUCGgUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 187482 0.69 0.519674
Target:  5'- cGCCgGGCCGa-GGACgaGGCCGC-GCAGg -3'
miRNA:   3'- -UGGgCCGGUgcCCUG--UCGGUGuCGUC- -5'
10907 5' -62.4 NC_002794.1 + 82360 0.69 0.519674
Target:  5'- cGCCCGuccucGCCGCccGACAccGCCGCGGCGGa -3'
miRNA:   3'- -UGGGC-----CGGUGccCUGU--CGGUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 91192 0.69 0.519674
Target:  5'- uACCCGGCgACGcuguucgcGGACGGCgACgcgacGGCGGa -3'
miRNA:   3'- -UGGGCCGgUGC--------CCUGUCGgUG-----UCGUC- -5'
10907 5' -62.4 NC_002794.1 + 104422 0.69 0.519674
Target:  5'- gGCCuCGGCCGCcggcccGGAC-GCCGCcGCGGg -3'
miRNA:   3'- -UGG-GCCGGUGc-----CCUGuCGGUGuCGUC- -5'
10907 5' -62.4 NC_002794.1 + 47331 0.69 0.519674
Target:  5'- uGCCCGGCUcccGCGGcGGCGGCCucCGGaCGu -3'
miRNA:   3'- -UGGGCCGG---UGCC-CUGUCGGu-GUC-GUc -5'
10907 5' -62.4 NC_002794.1 + 154346 0.69 0.519674
Target:  5'- uGCCgCGGCCgagcucccgcGCGGucCAgGCCGCGGCGGc -3'
miRNA:   3'- -UGG-GCCGG----------UGCCcuGU-CGGUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 86913 0.68 0.529005
Target:  5'- gACCCGGUgACGcccguggcGGGCAGgCGgGGCGGg -3'
miRNA:   3'- -UGGGCCGgUGC--------CCUGUCgGUgUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 37880 0.68 0.529005
Target:  5'- cUCgGGCgGCgGGGGCGGUgGCGGCGGc -3'
miRNA:   3'- uGGgCCGgUG-CCCUGUCGgUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 38102 0.68 0.537454
Target:  5'- -aCCGGCgugaagaCGCGGGAgAGCCGCGcCAGc -3'
miRNA:   3'- ugGGCCG-------GUGCCCUgUCGGUGUcGUC- -5'
10907 5' -62.4 NC_002794.1 + 125319 0.68 0.538395
Target:  5'- cGCCCGcGCCGagcCGGaGCGcGCCACGGCGc -3'
miRNA:   3'- -UGGGC-CGGU---GCCcUGU-CGGUGUCGUc -5'
10907 5' -62.4 NC_002794.1 + 48447 0.68 0.538395
Target:  5'- --gCGGCCAuCGGGACAcagccGCCACGuCAGg -3'
miRNA:   3'- uggGCCGGU-GCCCUGU-----CGGUGUcGUC- -5'
10907 5' -62.4 NC_002794.1 + 142141 0.68 0.538395
Target:  5'- cGCCgGGUCACGGcGGaGGCgGCGGUAGc -3'
miRNA:   3'- -UGGgCCGGUGCC-CUgUCGgUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 91871 0.68 0.547843
Target:  5'- uCCCgggGGUgGCGGcGGCGGCCGCgacgAGCAGu -3'
miRNA:   3'- uGGG---CCGgUGCC-CUGUCGGUG----UCGUC- -5'
10907 5' -62.4 NC_002794.1 + 117982 0.68 0.547843
Target:  5'- aGCUggUGGUacaGCaGGGGCuGCCGCGGCAGg -3'
miRNA:   3'- -UGG--GCCGg--UG-CCCUGuCGGUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 90676 0.68 0.547843
Target:  5'- -gCCGGCCGCGuGGCuguucguguGcCCGCGGCAGg -3'
miRNA:   3'- ugGGCCGGUGCcCUGu--------C-GGUGUCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.