miRNA display CGI


Results 21 - 40 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10907 5' -62.4 NC_002794.1 + 2616 0.66 0.682923
Target:  5'- uACCCGGCCGcCGGcGCGcGuCCcCAGCAa -3'
miRNA:   3'- -UGGGCCGGU-GCCcUGU-C-GGuGUCGUc -5'
10907 5' -62.4 NC_002794.1 + 139891 0.66 0.682923
Target:  5'- uCUCGGUgaUGCGGGcCAGCCGCAGg-- -3'
miRNA:   3'- uGGGCCG--GUGCCCuGUCGGUGUCguc -5'
10907 5' -62.4 NC_002794.1 + 54983 0.66 0.682923
Target:  5'- gACCC-GCCGCGGcGACGGCgGCgacucgccgGGCGu -3'
miRNA:   3'- -UGGGcCGGUGCC-CUGUCGgUG---------UCGUc -5'
10907 5' -62.4 NC_002794.1 + 65927 0.66 0.682923
Target:  5'- -gCCGGCgGCGGuGGCGuCgGCGGCGGu -3'
miRNA:   3'- ugGGCCGgUGCC-CUGUcGgUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 127354 0.66 0.681961
Target:  5'- cGCUcgCGGCgGCGGcGCGGCCGCucgugucGGCGGa -3'
miRNA:   3'- -UGG--GCCGgUGCCcUGUCGGUG-------UCGUC- -5'
10907 5' -62.4 NC_002794.1 + 58515 0.66 0.673291
Target:  5'- uGCUCGuCCACGGGcACGccgaggccuucGCCGCGGCGc -3'
miRNA:   3'- -UGGGCcGGUGCCC-UGU-----------CGGUGUCGUc -5'
10907 5' -62.4 NC_002794.1 + 90568 0.66 0.673291
Target:  5'- uACCCGGCgGCGGGuccCGGgCGCucCAGu -3'
miRNA:   3'- -UGGGCCGgUGCCCu--GUCgGUGucGUC- -5'
10907 5' -62.4 NC_002794.1 + 124405 0.66 0.673291
Target:  5'- -gCCGGUCGuCGGGGCGccguccGCCGCGGUc- -3'
miRNA:   3'- ugGGCCGGU-GCCCUGU------CGGUGUCGuc -5'
10907 5' -62.4 NC_002794.1 + 49517 0.66 0.673291
Target:  5'- cGCCgGGUaCAUGGGuucGCGcGCCGCgAGCAGa -3'
miRNA:   3'- -UGGgCCG-GUGCCC---UGU-CGGUG-UCGUC- -5'
10907 5' -62.4 NC_002794.1 + 147427 0.66 0.673291
Target:  5'- uACCCGcuGCUGCuGGACGGCUACgGGCGc -3'
miRNA:   3'- -UGGGC--CGGUGcCCUGUCGGUG-UCGUc -5'
10907 5' -62.4 NC_002794.1 + 188748 0.66 0.673291
Target:  5'- gACCaCGaucaggaacGCCACGuGGaACAGCCcgguGCAGCGGu -3'
miRNA:   3'- -UGG-GC---------CGGUGC-CC-UGUCGG----UGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 188390 0.66 0.673291
Target:  5'- uCCCgGGCUucucgccgcagACGGGACcGCCGCcGCAa -3'
miRNA:   3'- uGGG-CCGG-----------UGCCCUGuCGGUGuCGUc -5'
10907 5' -62.4 NC_002794.1 + 190789 0.66 0.673291
Target:  5'- aACUCGGUC-CGGGACAcGCCGuaacgcgcCAGCu- -3'
miRNA:   3'- -UGGGCCGGuGCCCUGU-CGGU--------GUCGuc -5'
10907 5' -62.4 NC_002794.1 + 133519 0.66 0.670396
Target:  5'- gACCUGGCCGuugaguuggccgacCGGGuACGcguugugcaccGUCACGGCGGa -3'
miRNA:   3'- -UGGGCCGGU--------------GCCC-UGU-----------CGGUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 141619 0.66 0.667497
Target:  5'- -aCCGGCUcgcggucuagcgACGGGaaggccggcguggccGCGGCCGcCGGCGGg -3'
miRNA:   3'- ugGGCCGG------------UGCCC---------------UGUCGGU-GUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 101586 0.66 0.663629
Target:  5'- cGCCgCGGCCGgGGGGgcgggugcCGGCCcGCcgGGCGGg -3'
miRNA:   3'- -UGG-GCCGGUgCCCU--------GUCGG-UG--UCGUC- -5'
10907 5' -62.4 NC_002794.1 + 180605 0.66 0.663629
Target:  5'- cCUCGcGCCGCGGGcCAcGaCACGGCGGc -3'
miRNA:   3'- uGGGC-CGGUGCCCuGU-CgGUGUCGUC- -5'
10907 5' -62.4 NC_002794.1 + 118210 0.66 0.663629
Target:  5'- -gCCGucGCCuCGcGGACGGCCAC-GCAGc -3'
miRNA:   3'- ugGGC--CGGuGC-CCUGUCGGUGuCGUC- -5'
10907 5' -62.4 NC_002794.1 + 102707 0.66 0.663629
Target:  5'- gGCCgGGCCGCcGGACGGgCGCGcCAa -3'
miRNA:   3'- -UGGgCCGGUGcCCUGUCgGUGUcGUc -5'
10907 5' -62.4 NC_002794.1 + 85953 0.66 0.662662
Target:  5'- gACCCggaacggGGCCGCGgcccucucaucGGACcGCCGCGGCc- -3'
miRNA:   3'- -UGGG-------CCGGUGC-----------CCUGuCGGUGUCGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.