Results 61 - 80 of 202 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10907 | 5' | -62.4 | NC_002794.1 | + | 117262 | 0.67 | 0.624824 |
Target: 5'- gGCCuCGGCCagacacuccGCGacgcccugcgcGGACAGCUGCGGCGu -3' miRNA: 3'- -UGG-GCCGG---------UGC-----------CCUGUCGGUGUCGUc -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 36182 | 0.67 | 0.624824 |
Target: 5'- cGCCCcgGGCCgccagcaugACGuGGcacACGGCCAcCAGCAGg -3' miRNA: 3'- -UGGG--CCGG---------UGC-CC---UGUCGGU-GUCGUC- -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 16810 | 0.67 | 0.624824 |
Target: 5'- cGCCCaGCCGCccccGCcGCCGCAGCAGc -3' miRNA: 3'- -UGGGcCGGUGccc-UGuCGGUGUCGUC- -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 65220 | 0.67 | 0.624824 |
Target: 5'- cGCUCGcauuCCACGGGcgGCGgucGCCGCGGCGGc -3' miRNA: 3'- -UGGGCc---GGUGCCC--UGU---CGGUGUCGUC- -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 36838 | 0.67 | 0.623853 |
Target: 5'- cCCCGGaCCgucucguagguguGCGGaGACcGCCACuGCAGc -3' miRNA: 3'- uGGGCC-GG-------------UGCC-CUGuCGGUGuCGUC- -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 14504 | 0.67 | 0.621912 |
Target: 5'- gGCCCGcGCuCGCGGcGCucguggcgccgcucGGCCACGGCGc -3' miRNA: 3'- -UGGGC-CG-GUGCCcUG--------------UCGGUGUCGUc -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 87309 | 0.67 | 0.615119 |
Target: 5'- uACCCGGUaGCGGuccccaggucCAGCgGCGGCAGg -3' miRNA: 3'- -UGGGCCGgUGCCcu--------GUCGgUGUCGUC- -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 184326 | 0.67 | 0.615119 |
Target: 5'- cGCUcaCGGCCG-GGGACAGCgACAGgGu -3' miRNA: 3'- -UGG--GCCGGUgCCCUGUCGgUGUCgUc -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 25117 | 0.67 | 0.615119 |
Target: 5'- -aCCGGUCgagaucgaGCGGGGCAcgcGCgCACGGUAGg -3' miRNA: 3'- ugGGCCGG--------UGCCCUGU---CG-GUGUCGUC- -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 44264 | 0.67 | 0.615119 |
Target: 5'- gGCUCGGCCGCcgGGGACGGaggaguccgcgcCCGCcgggccggcgaGGCGGg -3' miRNA: 3'- -UGGGCCGGUG--CCCUGUC------------GGUG-----------UCGUC- -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 186642 | 0.67 | 0.615119 |
Target: 5'- aGCCCG--CGCGGGuCGGCCGCGcGCAc -3' miRNA: 3'- -UGGGCcgGUGCCCuGUCGGUGU-CGUc -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 44705 | 0.67 | 0.615119 |
Target: 5'- cGCCCGGCCGCGaccGCGGCgACGuCGGc -3' miRNA: 3'- -UGGGCCGGUGCcc-UGUCGgUGUcGUC- -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 113866 | 0.67 | 0.605425 |
Target: 5'- uUCCGGCCA-GGcGcgcuCGGCCGCGGCGc -3' miRNA: 3'- uGGGCCGGUgCC-Cu---GUCGGUGUCGUc -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 34082 | 0.67 | 0.605425 |
Target: 5'- -gCCGGCgGCcGGGCAGCCGucgGGCGGc -3' miRNA: 3'- ugGGCCGgUGcCCUGUCGGUg--UCGUC- -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 47742 | 0.67 | 0.605425 |
Target: 5'- cGCCgGGuCCACGuGGCGGCCguggucGCGGCAc -3' miRNA: 3'- -UGGgCC-GGUGCcCUGUCGG------UGUCGUc -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 68761 | 0.67 | 0.605425 |
Target: 5'- aGCCgGGCCGcCGGGGCGccggacGCC-CGGCu- -3' miRNA: 3'- -UGGgCCGGU-GCCCUGU------CGGuGUCGuc -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 192152 | 0.67 | 0.605425 |
Target: 5'- gGCgCGGUCGCGGcGgAGCCuGCGGUAGg -3' miRNA: 3'- -UGgGCCGGUGCCcUgUCGG-UGUCGUC- -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 119132 | 0.67 | 0.605425 |
Target: 5'- gGCCUGGCaggcguuCGGGugGuCgCGCAGCAGg -3' miRNA: 3'- -UGGGCCGgu-----GCCCugUcG-GUGUCGUC- -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 114202 | 0.67 | 0.604456 |
Target: 5'- cGCCaCGGCCGgcgucucCGGcGGCAGCCAgccgauCAGCGc -3' miRNA: 3'- -UGG-GCCGGU-------GCC-CUGUCGGU------GUCGUc -5' |
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10907 | 5' | -62.4 | NC_002794.1 | + | 63446 | 0.67 | 0.602519 |
Target: 5'- cACCaCGGCCGCGGcGGCgacgaugacgacgaGGCgGCGGCc- -3' miRNA: 3'- -UGG-GCCGGUGCC-CUG--------------UCGgUGUCGuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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